FC918043

Overview
NameFC918043
Unique NameFC918043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD+ SN+SVII PT KK+ITDYGSPEE
Sbjct:   78 AANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEE 152          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 58/75 (77.33%), Postives = 69/75 (92.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEE
Sbjct:   36 AANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEE 110          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 57/75 (76.00%), Postives = 69/75 (92.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEE
Sbjct:   79 AANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEE 153          

HSP 2 Score: 87.8113 bits (216), Expect = 8.199e-17
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            A + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE++
Sbjct:    2 AYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAA 80          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.882e-29
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            +ANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD+ SNV V++ PTDKKSI DYGSPE+
Sbjct:   84 SANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQ 158          

HSP 2 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 ASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            AST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGES+
Sbjct:    2 ASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESA 85          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            +ANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD+ +N+ VI   TDKK+I D+GS ++
Sbjct:   62 SANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDK 136          
The following BLAST results are available for this feature:
BLAST of FC918043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_WHEAT1.702e-3081.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU1.702e-3077.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL3.791e-3076.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.882e-2978.67Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE1.222e-2058.67Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918043 ID=FC918043; Name=FC918043; organism=Citrus clementina; type=EST; length=846bp
TGGCTTCAACTCAATGCTTCTTGCACCACCATGCACTCTCTACTACACCA
GCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAAGCCCACCCA
GATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCG
CCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTC
GGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCTAGTACTTC
TCTTTTTATCTTTATTACTCATTTGCCGCTATCTATCTATCTACTCTTTT
TGACAGTTCGTGCATGCACTTAGAAAGCTTTCTTTCCCAGTTCTTGAAAT
TGGAATGATTTTATAATTATGATAACATATATTGAATGTACGAGTAATGT
TAGAGCCACATACTCTTTCGTGTGAAAACTGACGCGGCACAATAGTATTG
GATGGAATAAAACAAATTACGGAACCTATGTGTGCGGCTGTATCACTAGC
CTGTTGAGTGTAACAGTGGTATGAGCCTAATTTAAAGAAAGAAATTGGGG
TCATGATAATAATAGTATGATGATGAAAATGCTTTTTTTTTTCGAATTAA
CTTGAACTGTAATTTTGTTGCAGCCAATGTGTTTGGTAAGCCAAAGACCA
ACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCC
TCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCAGGTCAGGTTCTTAG
ATACGAAGACAACTTTGATTCTAACAGCAATGTCTCCGTCATAATCACTC
CAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGGAATT
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