FC918044

Overview
NameFC918044
Unique NameFC918044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.871e-23
Identity = 56/143 (39.16%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++   +   +  L++A++++L+  DP+  I+LYINS G         G+ + G +IYDT+  +KCEV T+ +G +  MA L+LA+G KGKRF +P+A+IMI QP   S G   A+D+ I   E +  +  +++LL+KHTG
Sbjct:   28 RIIFVTGKIEDYMANLIIAQMIFLESEDPEKDIFLYINSPG---------GVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARIMIHQPLGGSQG--QATDIAIHTTEILKIKKCMIELLSKHTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THET8 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.871e-23
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V  +VVA+L++L   +P   I LYINS G         G    G AIYDT+  ++  V T+ +G A  MA ++LAAG KG+R+ +PHAK+MI QP     G   ASD+ I+A+E +  +  L ++LAKHTG
Sbjct:   27 RIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPG---------GEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRG--TASDIAIQAQEILKAKKLLNEILAKHTG 158          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THET2 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpP PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.871e-23
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V  +VVA+L++L   +P   I LYINS G         G    G AIYDT+  ++  V T+ +G A  MA ++LAAG KG+R+ +PHAK+MI QP     G   ASD+ I+A+E +  +  L ++LAKHTG
Sbjct:   27 RIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPG---------GEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRG--TASDIAIQAQEILKAKKLLNEILAKHTG 158          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_FUSNN (ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium nucleatum subsp. nucleatum GN=clpP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.749e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   V   ++A+L+YL+  DP+  I +YINS G         G  ++G AIYDT+  +K +V TV VG A  M   LLAAG KGKRF + +++IMI QP +       A+D+ I A E +  +D L +LLAK+TG
Sbjct:   27 RIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPG---------GSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQPLISGGLKGQATDISIHANELLKIKDRLAELLAKNTG 160          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G  +      LV+A+L++L+  DP   I+LYINS G         G  + GFAIYDT+  +K +V T+ VG A  MA  LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  RD L K+LA++TG
Sbjct:   28 RIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG---------GSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQG--QATDIKIHAERILKLRDKLDKILAENTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G  +      LV+A+L++L+  DP   I+LYINS G         G  + GFAIYDT+  +K +V T+ VG A  MA  LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  RD L K+LA++TG
Sbjct:   28 RIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG---------GSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQG--QATDIKIHAERILKLRDKLDKILAENTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNY3 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Synechocystis sp. (strain PCC 6803) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +  ++   +VA L+YL   DP  PIYLYINS G         G  + G AIYDT+  +K EV T+ VG A  M   LLA+G  GKR  +PHA+IMI QP +  +G   A+D+ I A+E +  R  L +++A+ TG
Sbjct:   31 RIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPG---------GSVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIMIHQP-MGGTGRRQATDIDIEAREILRIRQQLNEIMAQRTG 163          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_SYNFM (ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   V  +++A+L++L+  DP   I+ YINS G         G+ + G AIYDT+  +K  V T+ +G A  MA +LLAAG KGKR+ +PH +IM+ QP     G   A+DV I+AKE +  R+ L  +L +HTG
Sbjct:   28 RIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG---------GLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQG--QATDVEIQAKEILKLREELNDILVRHTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_CYAP8 (ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp. (strain PCC 8801) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   +   +VA L+YL   DP  PIYLYINS G         G  + G AIYDT+  +K +V T+ VG A  M   LLA+GT GKR  +PHA+IMI QP +  +G   A+D+ I A E +  R  L ++LA  TG
Sbjct:   31 RIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPG---------GSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQP-MGGTGRRQATDIQIEANEILRIRQQLNEILAHKTG 163          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+ +G P+   V  ++VA+L++L+  DP   I LYINS G         G  + G AIYDT+  +KC V T+ VG A  M  LLL AG KGKR+ +P+++IMI QP   + G   A+D+ I+AKE +  R  +  L+ KHTG
Sbjct:   27 RIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPG---------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQG--QATDIDIQAKEILRLRSYINGLIVKHTG 158          
The following BLAST results are available for this feature:
BLAST of FC918044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_WIGBR2.871e-2339.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET82.871e-2341.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET22.871e-2341.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FUSNN3.749e-2341.26ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEPX4.897e-2344.06ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP34.897e-2344.06ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNY34.897e-2341.96Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP_SYNFM6.395e-2340.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CYAP86.395e-2342.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXD6.395e-2342.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918044 ID=FC918044; Name=FC918044; organism=Citrus clementina; type=EST; length=889bp
CCAGTTTCTTCTTCACTTCAAAATCAAAGTTCAAAACTACAAAGCACAAT
CAAAACAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCA
TGTCGACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACT
TCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTG
CTCAGCTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACC
CCTTTCTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTT
GTCAATCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGA
TTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACAT
ACAATGAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTT
CTTCATGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCAC
AGAGCTTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGG
CACCTATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGT
GAATCGGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGAT
GCAAATGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCA
TGGCTTGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATG
CCTCATGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTT
GCTGCCCGCTAGTGATGTTCTTATTCGTGCAAAAGAAGCAATGGTAAACA
GAGACACACTTGTAAAACTTCTTGCCAAGCACACTGGAA
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