FC918044

Overview
NameFC918044
Unique NameFC918044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.071e-22
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   +   +VA+++YL   D   PIYLYINS G         G  + G AIYDT+  +K +V T+ VG A  M   LLAAGTKGKR  +PH++IMI QP L  +    ASD+ I AKE +  +D L   +A  TG
Sbjct:   31 RILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLYINSPG---------GSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQP-LGGTSQRQASDIEIEAKEILRIKDMLNMSMADMTG 163          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.071e-22
Identity = 60/144 (41.67%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS-SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI++IG P+  ++   +V  ++YL   DP+  I +YINS G         G  + G AIYDT+  +K ++ TV VG A  M   LLAAGTKGKRF +PH++IM+ QP L +  G   ASD+ IRA+E +  +  + ++LA+ TG
Sbjct:   31 RILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPG---------GSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGTIQG--QASDIEIRARETLRVKRRMNEILAQTTG 163          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.071e-22
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   +   ++A ++YL   DP+  I+LYINS G         G  S G AIYDT+  ++ +V T+ VG A  M   LL AG KGKR  +PH++IMI QP   + G   A+D+ I+AKE +  +D L ++L++ TG
Sbjct:   30 RIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPG---------GSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQG--QATDIGIQAKEILYTKDRLNQILSERTG 161          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L K+LA+ TG
Sbjct:   28 RIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNKILAERTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL-PASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V   ++A+L++L+  DP+  I LYINS G         G  S G AIYDT+  +K ++ T A+G A  M   LLAAGTKGKRF +P+ +I++ QP +   GL   ASDV I A+E +  +  L ++L++HTG
Sbjct:   34 RIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPG---------GSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAV--GGLAGQASDVEIHARELIRTKRRLNEILSEHTG 166          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_NITSB (ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp. (strain SB155-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 58/143 (40.56%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+ +   +  AV   +VA+L++L+  DP   IYLYINS G         G+ + G +IYDT+  +K +V T+ +G A  M   LL++GTKGKR+ +PHA+IMI QP   + G   A+D+ I+AKE +  +  L ++LA++TG
Sbjct:   29 RIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPG---------GVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQG--QATDIEIQAKEILRLKKILNEILAENTG 160          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 58/143 (40.56%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +  AV + +VA++++L+  DP+  I +Y+NS G         G  + G AIYDT+ Q+  +V T+  G A  M   LL+ GTKGKR  +P+A+IMI QP   + G   A D+ I+AKE +  ++TL  LLA+HTG
Sbjct:   33 RIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPG---------GSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQG--QAVDIEIQAKEILFLKETLNGLLAEHTG 164          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_PROVI (ATP-dependent Clp protease proteolytic subunit OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.206e-21
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   V  L++A+L++L+  DP   I++Y+NS G         G  S G  IYDT+  ++ +V TV VG A  M   LLA+G KGKR  +PH++IMI QP   + G    SD++I+A+E    R  L +++AKHTG
Sbjct:   53 RIIFLGSGIDEHVAGLIMAQLIFLESEDPDRDIFIYVNSPG---------GSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQPSGGAQG--QESDIIIQAREIEKIRRLLEEIMAKHTG 184          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSL (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sulfurreducens GN=clpP PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.206e-21
Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V  LV+A++++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M  LLL+ G KGKRF + H++IMI QP     G   A+D+ I A+E +  +  L ++LA++TG
Sbjct:   27 RIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG---------GVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMIHQPLGGFQG--QATDIHIHAQEILKLKKRLNEILAENTG 158          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.206e-21
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   +   +VA+++YL   D   PIYLYINS G         G  + G AIYDT+  +K ++ T+ VG A  M   LL+AGTKGKR  +PH++IMI QP L  +    ASD+ I A+E +  ++ L K +A+ TG
Sbjct:   31 RILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPG---------GSVTAGLAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQP-LGGTAQRQASDIEIEAREILRIKEMLNKSMAEMTG 163          
The following BLAST results are available for this feature:
BLAST of FC918044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_PROM97.071e-2242.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNJB7.071e-2241.67ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_GLOVI7.071e-2239.16ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_STAHJ9.235e-2240.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RUBXD9.235e-2241.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITSB9.235e-2240.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS99.235e-2240.56ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PROVI1.206e-2139.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSL1.206e-2140.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMT1.206e-2140.56ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918044 ID=FC918044; Name=FC918044; organism=Citrus clementina; type=EST; length=889bp
CCAGTTTCTTCTTCACTTCAAAATCAAAGTTCAAAACTACAAAGCACAAT
CAAAACAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCA
TGTCGACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACT
TCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTG
CTCAGCTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACC
CCTTTCTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTT
GTCAATCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGA
TTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACAT
ACAATGAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTT
CTTCATGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCAC
AGAGCTTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGG
CACCTATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGT
GAATCGGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGAT
GCAAATGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCA
TGGCTTGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATG
CCTCATGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTT
GCTGCCCGCTAGTGATGTTCTTATTCGTGCAAAAGAAGCAATGGTAAACA
GAGACACACTTGTAAAACTTCTTGCCAAGCACACTGGAA
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