FC918044

Overview
NameFC918044
Unique NameFC918044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_PELUB (ATP-dependent Clp protease proteolytic subunit OS=Pelagibacter ubique GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++  P+   V  LV A+L++L+  DPK  I LYINS G         G+ + G  IYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IM+ QP     G   A+D+ I A E +  +  L ++ +KHTG
Sbjct:   37 RIIFLVGPINDNVASLVTAQLLFLESEDPKKEINLYINSPG---------GLVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPNSRIMVHQPSAGFQG--QATDIEIHANEVLALKKRLNEIYSKHTG 168          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_PELPD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain DSM 2379) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +   V  L++A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M  +LLAAG KGKRF + H++IMI QP     G   A+D+ I AKE +  ++ L  +LA  TG
Sbjct:   27 RIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPG---------GVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIHQPLGGFQG--QATDISIHAKEILRMKEELNSILADLTG 158          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G P+   ++ L++A+L++L+  DP   I+LYINS G         G  +   A+YDT+  +K +V T+ +G A     LLLA+GTKGKR+ +P+A++MI QP     G   A++  I  KE +  R+ L ++L+KHTG
Sbjct:   28 RIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG---------GSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKGKRYALPNARVMIHQPAGGVQG--KATEAEIHIKELLRLRERLNEILSKHTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V   +V++L++L   DP+  I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P++++MI QP   + G   A+++ I AK  +  RD L ++LA++TG
Sbjct:   28 RIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRILAENTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_GEOMG (ATP-dependent Clp protease proteolytic subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G P+   V  LV+A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M  LLL+ G KGKRF + H++IMI QP     G   A+D+ I A+E +  +  L +++A+++G
Sbjct:   27 RIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMIHQPLGGFQG--QATDIHIHAQEILKMKKRLNEIIAENSG 158          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            R++++  P+      L+VA+L++L+  +P   +Y YINS G         G  S G AIYDT+  +K  V T+ +G A  M   LLAAG KGKRF +P++++MI QP     G   ASD+ I A+E +  R  L ++LAKHTG
Sbjct:   44 RVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYFYINSPG---------GSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQPLGGFQG--QASDIEIHAREILGIRAKLNEMLAKHTG 175          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_ALKMQ (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G  +      L+VA+L++L+  DP   I +YINS G         G  + G AIYDT+  +K +V T+ VG A  M   LLAAG KGKRF +P+A++MI QP   + G   A D+ I A+  +  RDTL K+L + TG
Sbjct:   28 RIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPG---------GSITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRG--QAEDIRIHAERIVKLRDTLNKILVERTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP1_BIFLO (ATP-dependent Clp protease proteolytic subunit 1 OS=Bifidobacterium longum GN=clpP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 57/143 (39.86%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+++G+ +  A  + V+A+L+ L+  DP   + +YINS G         G  +   AIYDT+  +K +V TV +G A   A +LLA+GTKGKR M+P+A+++I QP +   G   A+++ I+AKE +  R+ L + LAKHTG
Sbjct:   66 RIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMMYINSPG---------GSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLIHQPAI-DQGFGKATEIEIQAKEMLRMREWLEETLAKHTG 198          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RIV++G  +      LV+A++++L+  DP   I+LYINS G         G  + G AIYDT+  +K +V T+ VG A  MA  LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  RD L ++L+++TG
Sbjct:   28 RIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG---------GSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQG--QATDIKIHAERLLRLRDKLERILSENTG 159          
BLAST of FC918044 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  460 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 888
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R  L K+LA+ TG
Sbjct:   28 RIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAATHILKTRAKLNKILAERTG 159          
The following BLAST results are available for this feature:
BLAST of FC918044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PELUB2.687e-2139.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELPD2.687e-2141.26ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH2.687e-2139.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOTN2.687e-2139.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOMG2.687e-2139.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSE2.687e-2140.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKMQ2.687e-2141.26ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_BIFLO2.687e-2139.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THETN3.509e-2141.26ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT3.509e-2140.56ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918044 ID=FC918044; Name=FC918044; organism=Citrus clementina; type=EST; length=889bp
CCAGTTTCTTCTTCACTTCAAAATCAAAGTTCAAAACTACAAAGCACAAT
CAAAACAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCA
TGTCGACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACT
TCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTG
CTCAGCTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACC
CCTTTCTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTT
GTCAATCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGA
TTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACAT
ACAATGAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTT
CTTCATGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCAC
AGAGCTTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGG
CACCTATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGT
GAATCGGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGAT
GCAAATGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCA
TGGCTTGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATG
CCTCATGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTT
GCTGCCCGCTAGTGATGTTCTTATTCGTGCAAAAGAAGCAATGGTAAACA
GAGACACACTTGTAAAACTTCTTGCCAAGCACACTGGAA
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