FC918046

Overview
NameFC918046
Unique NameFC918046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length802
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.601e-13
Identity = 41/165 (24.85%), Postives = 75/165 (45.45%), Query Frame = 3
Query:  267 ERDIRIRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEFRRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVNIGEQAVIPE 761
            E++ +IR +++  DA N G +D   +   LS+         A  L          RV Y +F  Y+   E  L ++F  ID   +G +   E+     + G+ + D +    V+ +D+  +  +   E++DF+LLYP    +  +   W    +++IGE   +PE
Sbjct:   70 EKEKKIREMYDRLDADNDGSIDIRDLTQALSSQTPHIPATMAPKLLAKMKREDSDRVTYADFTNYVIAHEARLAEVFDQIDSNRDGEVDVSEIKSYCKEMGVNLDDHKALSIVKKMDQSGSSSVNLNEFQDFMLLYP-STDMREMVDFWRHNLIIDIGEDGQVPE 233          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  258 SKEERDIR-IRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEF-----RRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEWR 656
            S  E +I+ +++LF   D   SG + Y Q+++GLS L+        + L +  D + +G +DY EF      RY    +  ++K FQ +D + NG I  +EL  A+ + G+   +  +   +  VD DN+G I FEE+R
Sbjct:  365 SLSEEEIKGLKTLFANMDTNRSGTITYEQLQTGLSRLRSRLSETEVQQLVEASDVDGNGTIDYYEFISATMHRYKLHHDEHVHKAFQHLDKDKNGHITRDELESAMKEYGMG-DEASIKEVISEVDTDNDGKINFEEFR 502          
BLAST of FC918046 vs. ExPASy Swiss-Prot
Match: CDPKL_ARATH (Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  240 LLALRESKEERDIR-IRSLFNFFDAANSGYLDYAQIESGLSALQIPAQYKYAKDLFKVCDANRDGRVDYQEF-----RRYMDIKEMELYKIFQTIDVEHNGCILPEELWDALVKAGIEISDEELARFVEHVDKDNNGIITFEEW 653
            L  + ES  E +I+ ++++F   D   SG + Y ++++GL+ L         K L +  D + +G +DY EF      RY   ++  +YK FQ  D +++G I  +EL  A+ + G+   +  +   +  VD DN+G I FEE+
Sbjct:  370 LKVIAESLSEEEIKGLKTMFANIDTDKSGTITYEELKTGLTRLGSRLSETEVKQLMEAADVDGNGTIDYYEFISATMHRYKLDRDEHVYKAFQHFDKDNSGHITRDELESAMKEYGMG-DEASIKEVISEVDTDNDGRINFEEF 512          
The following BLAST results are available for this feature:
BLAST of FC918046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CMC3_CAEBR6.601e-1324.85Probable calcium-binding mitochondrial carrier CBG... [more]
CDPKN_ARATH1.626e-1131.65Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
CDPKL_ARATH1.626e-1129.86Calcium-dependent protein kinase 21 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YD14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YD14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918046 ID=FC918046; Name=FC918046; organism=Citrus clementina; type=EST; length=802bp
CGGAAAAGGAAACGATTTTTCAATTTCCTTTATCAGATTATACATACAAG
TTCCAGATTGAATCGATGCTTGTGGAGCAACAATCGAATCTCGTAATTTT
GATTAAAATCTAGGGGCAGATGACCGGAGCAGGGGCAGGACACGCGGTGG
AACGCGTCGGATTGCCAAAGATGGAGTCGACCCGCTCCGCTTCATGCAAC
CCGGTGAGGAAATCGGGTCCGGTCACGATGGACCACGTGCTGCTCGCGTT
ACGCGAGAGCAAGGAAGAGAGGGACATCCGAATCCGGAGCCTCTTCAATT
TCTTCGATGCGGCGAATTCCGGATACTTGGATTACGCGCAGATCGAGAGC
GGGTTGTCGGCGCTGCAGATTCCGGCACAGTACAAGTACGCGAAGGATTT
GTTCAAAGTCTGCGACGCAAACAGAGACGGACGCGTCGATTATCAGGAGT
TTCGTCGATACATGGACATTAAAGAGATGGAGCTTTATAAGATTTTTCAA
ACTATTGATGTCGAGCACAATGGATGCATTTTGCCCGAAGAGCTTTGGGA
CGCGCTTGTTAAGGCTGGGATCGAGATTAGTGACGAGGAATTGGCTCGTT
TTGTGGAGCATGTTGATAAGGATAATAATGGAATCATAACTTTTGAAGAA
TGGAGAGATTTCCTTCTACTCTATCCTCATGAGGCAACTATTGAAAATAT
TTATCATCATTGGGAGAGGGTATGCCTCGTAAATATTGGAGAACAGGCTG
TTATTCCAGAAGGCATCAGTAAACATGTTCAGAGAAGCAAATACTTTATT
GC
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