FC918054

Overview
NameFC918054
Unique NameFC918054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.639e-43
Identity = 79/156 (50.64%), Postives = 108/156 (69.23%), Query Frame = 1
Query:   55 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 510
            YQH LDK  PH   RW V   ++ ++ VR+ + +G+Y+I YGLG++LLN  + FL+P+ D     +  +        S+EFRPF+RRLPEFKFWY   R+  I  +L+ FS FD+PVFWPILL Y+++LF LTMRRQI HMIKYRY+P  +GK++Y
Sbjct:   28 YQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKKKY 183          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.447e-43
Identity = 79/163 (48.47%), Postives = 112/163 (68.71%), Query Frame = 1
Query:   49 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP---------EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 510
            R Y+H +D+++P+  +RW+    +++++ +R+ LV+G+YI+ Y L IYLLNL + FL+P+ DP         E  +G  LPT   DEFRPF+RRLPEFKFWY   R+     V +FF  FDVPVFWPIL+ Y+L+L     RRQI HM+KYRYVPF +GK+++
Sbjct:   20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEG-VLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.447e-43
Identity = 79/156 (50.64%), Postives = 108/156 (69.23%), Query Frame = 1
Query:   55 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 510
            YQH LDK  PH   RW V   ++ ++ VR+ + +G+Y+I YGLG++LLN  + FL+P+ D     +  +        S+EFRPF+RRLPEFKFWY   R+  I  VL+ FS FD+PVFWPILL Y+++LF LTMRRQI HM+KYRY+P  +GK++Y
Sbjct:   28 YQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKY 183          
BLAST of FC918054 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.957e-38
Identity = 74/162 (45.68%), Postives = 113/162 (69.75%), Query Frame = 1
Query:   43 VSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG-FYIITYGLGIYLLNLLMGFLSPQIDPEYSD--GPTLPT---RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 510
            ++R+YQ+L++K++  +  RW     +  +Y +RV L  G +Y+ITY LGI+LL   + FLSP+ DPE  +  G +LPT   R  DE +PF+RRLPEF FW+ + ++  I    TF    D+PVFWPILL Y++++F++TM++QI HMIKY+Y+PF++GK+ Y
Sbjct:   22 IARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTY 183          
The following BLAST results are available for this feature:
BLAST of FC918054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_YEAST2.639e-4350.64Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SCHPO3.447e-4348.47Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_SACPS3.447e-4350.64Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_DICDI1.957e-3845.68Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA47CH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA47CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918054 ID=FC918054; Name=FC918054; organism=Citrus clementina; type=EST; length=925bp
TCAACGTCTCCGACGGCAGCCATCTCGCGGTGGAAATACAATGTTTCGCG
ACGGTACCAGCACTTACTGGACAAGTCGGTCCCACACGTTCTGCACCGTT
GGGTTGTCTGCTTGGCCGTGGTTTCAATCTACGCCGTACGCGTGTACCTT
GTCCAAGGGTTTTACATCATCACGTACGGTCTAGGCATCTACTTGTTGAA
TCTGTTGATGGGATTTCTGTCCCCGCAGATCGACCCCGAGTATAGCGACG
GGCCGACGCTGCCCACCCGCGGATCGGACGAGTTCCGGCCGTTCGTACGC
CGCTTGCCCGAGTTCAAGTTCTGGTACTGTGTCACAAGGTCCTTCTGCAT
TGGTTTTGTGTTGACATTCTTCAGTGCGTTTGATGTGCCTGTCTTTTGGC
CAATACTTCTTTTCTACTGGTTGATGCTATTCACTCTCACTATGAGGAGA
CAGATTATGCACATGATCAAGTATAGATATGTTCCATTCTCTCTTGGGAA
ACAGCGATATGATGGAAAGAGGCCATCTTCATCGGACGCCACGAGCTCTG
AGGACTGAGCCCACTTTAGTTGACAGCAGGAGCTCTTTTAAGGTTTGGTG
GTAGTAAGAATCTTTTTGAGAACAATTATTGTCTCCCAAGATTTTTCTTC
TCATGCTTTTGTATGCTCTGTTAGTAAATTTAGAGTAGCGAATCAAAGTG
GTCACTAATCCCTTCCCCCCCCACCCCATCGTCTTTTTCCCATAACAATC
CTTTTGTATAGGAGGGCCATGCTCCATTCATGTTGCTTAGAAGTTGAGCC
AGTAACTTTATGCCTACTAAGGAAAATGGTGGTCAAGAAGAAGCATTGGA
TTCCATTAAAATTTGGTTTTGAATGTACTTATTTGTTTTGTTCAGCTACA
AATGACATCCTCTCCTTTAAAGGTC
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