FC918123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17 Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKP 585 TN+Y++ L TT++DL K YG I S + D K K +GFV+F++ A +AV AL K S + ++ Q EQ+ TNLYI NL S+D+++L+ + PFG + S +++RD G SRG GF + E+ + NG+ + + P Sbjct: 56 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL----------------KASGVQAQMAKQQEQDP---------TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPP 204
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 2.710e-17 Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKP 585 TN+Y++ L TT++DL K YG I S + D K K +GFV+F++ A +AV AL K S + ++ Q EQ+ TNLYI NL S+D+++L+++ PFG + S +++RD G SRG GF + E+ + NG+ + + P Sbjct: 62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL----------------KASGVQAQMAKQQEQDP---------TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16 Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR--MVVSKPLYVALA 603 TN+ V L + T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+ LNG K K V A+ S + NLY+ +L +++ ++++ LFS +G I + +++ D G+SRG GF+ F EA A+ +NG+ + S+P+ V A Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFA 198
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15 Identity = 55/183 (30.05%), Postives = 100/183 (54.64%), Query Frame = 1 Query: 73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPR-GISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKED 618 +YV NL + TE+ L++ F G IA+ +M D + K+ + FV + S DA A++ LNGK+ ++ +++ F+ + D F NL++ +L+ ++DDE L++ F F + S VM D + G SRG GFV+F++ ++A A+ M G+ + +PL + A ++++ Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-------------NIVKINWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDN 243
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15 Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 1 Query: 40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 +TE SK TN+ V L + T+E+L+ FG G I S ++RD +G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D G+SRG GF+ F EA A+ +NG+ Sbjct: 60 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15 Identity = 60/183 (32.79%), Postives = 92/183 (50.27%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603 TN+ V L + T+++L+ F G + SA ++RD G S +GFVN+ N+ DA RA+ LNG + K V A+ SE ++K+A NLYI L ++ + ++ +F PFG I + +V+ D G+SRG F+ F EA A+ NG S+P+ V A Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSE-----------SIKDA-------NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15 Identity = 60/183 (32.79%), Postives = 92/183 (50.27%), Query Frame = 1 Query: 67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603 TN+ V L + T+++L+ F G + SA ++RD G S +GFVN+ N+ DA RA+ LNG + K V A+ SE +K+A NLYI L ++ + ++ +F PFG+I + +V+ D G+SRG F+ F EA A+ NG S+P+ V A Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE-----------TIKDA-------NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15 Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1 Query: 40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 +TE SK TN+ V L + T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D GISRG GF+ F EA A+ +NG+ Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15 Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1 Query: 40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 +TE SK TN+ V L + T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D GISRG GF+ F EA A+ +NG+ Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15 Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1 Query: 40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567 +TE SK TN+ V L + T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+ LNG + K V A+ S + NLY+ L ++ ++L+ LFS +G I + +++ D GISRG GF+ F EA A+ +NG+ Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189 The following BLAST results are available for this feature:
BLAST of FC918123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 143
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Sequences
The
following sequences are available for this feature:
EST sequence >FC918123 ID=FC918123; Name=FC918123; organism=Citrus clementina; type=EST; length=821bpback to top |