FC918123

Overview
NameFC918123
Unique NameFC918123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKP 585
            TN+Y++ L   TT++DL K    YG I S   + D    K K +GFV+F++   A +AV AL                K S  + ++  Q EQ+          TNLYI NL  S+D+++L+ +  PFG + S +++RD  G SRG GF    + E+    +   NG+ + + P
Sbjct:   56 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL----------------KASGVQAQMAKQQEQDP---------TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPP 204          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.710e-17
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPRGISRGSGFVAFSTPEEASIALLEMNGRMVVSKP 585
            TN+Y++ L   TT++DL K    YG I S   + D    K K +GFV+F++   A +AV AL                K S  + ++  Q EQ+          TNLYI NL  S+D+++L+++  PFG + S +++RD  G SRG GF    + E+    +   NG+ + + P
Sbjct:   62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL----------------KASGVQAQMAKQQEQDP---------TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR--MVVSKPLYVALA 603
            TN+ V  L  + T+E+ +  FG  G I S  ++RD   G+S  +GFVN+ + +DA +A+  LNG K   K   V  A+  S                     +  NLY+ +L  +++ ++++ LFS +G I + +++ D   G+SRG GF+ F    EA  A+  +NG+  +  S+P+ V  A
Sbjct:   34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFA 198          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 55/183 (30.05%), Postives = 100/183 (54.64%), Query Frame = 1
Query:   73 VYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDPR-GISRGSGFVAFSTPEEASIALLEMNGRMVVSKPLYVALA*RKED 618
            +YV NL  + TE+ L++ F   G IA+  +M D + K+  + FV +  S DA  A++ LNGK+ ++               +++   F+     + D F   NL++ +L+ ++DDE L++ F  F +  S  VM D + G SRG GFV+F++ ++A  A+  M G+ +  +PL +  A ++++
Sbjct:   77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-------------NIVKINWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDN 243          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 1
Query:   40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            +TE SK   TN+ V  L  + T+E+L+  FG  G I S  ++RD   +G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   G+SRG GF+ F    EA  A+  +NG+
Sbjct:   60 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.487e-15
Identity = 60/183 (32.79%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+ V  L  + T+++L+  F   G + SA ++RD   G S  +GFVN+ N+ DA RA+  LNG +   K   V  A+  SE           ++K+A       NLYI  L  ++  + ++ +F PFG I + +V+ D   G+SRG  F+ F    EA  A+   NG      S+P+ V  A
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSE-----------SIKDA-------NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 60/183 (32.79%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   67 TNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRD-PRGISRGSGFVAFSTPEEASIALLEMNGRMV--VSKPLYVALA 603
            TN+ V  L  + T+++L+  F   G + SA ++RD   G S  +GFVN+ N+ DA RA+  LNG +   K   V  A+  SE            +K+A       NLYI  L  ++  + ++ +F PFG+I + +V+ D   G+SRG  F+ F    EA  A+   NG      S+P+ V  A
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE-----------TIKDA-------NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1
Query:   40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            +TE SK   TN+ V  L  + T+E+L+  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   GISRG GF+ F    EA  A+  +NG+
Sbjct:   33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1
Query:   40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            +TE SK   TN+ V  L  + T+E+L+  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   GISRG GF+ F    EA  A+  +NG+
Sbjct:   33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of FC918123 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1
Query:   40 DTEISKSKFTNVYVKNLS*STTEEDLQKSFGEYGTIASAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGTNLYIKNLDDSIDDEKLKHLFSPFGNITSCKVMRDP-RGISRGSGFVAFSTPEEASIALLEMNGR 567
            +TE SK   TN+ V  L  + T+E+L+  FG  G I S  ++RD   G+S  +GFVN+ +  DA +A+  LNG +   K   V  A+  S                     +  NLY+  L  ++  ++L+ LFS +G I + +++ D   GISRG GF+ F    EA  A+  +NG+
Sbjct:   33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
The following BLAST results are available for this feature:
BLAST of FC918123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
RBMS2_HUMAN2.075e-1732.18RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_HUMAN2.710e-1732.18RNA-binding motif, single-stranded-interacting pro... [more]
ELAV3_XENLA8.718e-1630.60ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
PUB1_YEAST1.139e-1530.05Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
ELAV2_XENLA1.487e-1531.84ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV1_XENTR1.487e-1532.79ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELV1B_XENLA1.942e-1532.79ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV2_PONAB1.942e-1532.58ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE1.942e-1532.58ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.942e-1532.58ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918123 ID=FC918123; Name=FC918123; organism=Citrus clementina; type=EST; length=821bp
CCAGTTTATGTTGGACATTTCCTCCGCAGGCTGGAGAGAGATACTGAGAT
CAGCAAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCATAGTCGA
CAACTGAAGAAGATCTGCAAAAAAGTTTTGGTGAATATGGCACAATCGCA
AGTGCTGTTGTGATGAGGGATGGGGATGGCAAATCAAAATGCTTTGGATT
TGTCAACTTTGAGAATTCGGATGATGCTGCTAGAGCAGTTGAGGCTCTTA
ATGGAAAGAAATTTGACGATAAGGAGTGGTATGTTGGGAAAGCCCAAAAG
AAATCTGAAAGAGAACTTGAATTGAAACATCAATTTGAGCAAAATATGAA
GGAAGCAGCTGACAAATTTCAGGGAACAAACTTATATATTAAAAATTTAG
ATGATAGCATAGATGATGAAAAACTTAAGCACCTGTTCTCTCCATTTGGT
AACATCACATCATGCAAGGTAATGCGAGACCCACGTGGAATTAGTAGAGG
ATCCGGGTTTGTTGCGTTCTCAACTCCTGAAGAGGCATCTATAGCTCTTC
TGGAGATGAATGGCAGGATGGTTGTCTCCAAACCGCTTTATGTTGCTCTT
GCCTAACGCAAGGAAGATAGAAGAGCTAGGTTGCAGGCTCAATTTGCACA
AATGAGGCCAGTTGCAATGGCTTCTACAGTCGCTCCTCGAATGCCGATGT
ACCCTCCTGGTGGTCCAGGTATTGAGCAACAAATATTCTATGGTCAAGGC
CCGCCTGCTATGATTCCTCCTCAGCCTGCATTTGGTTATCAGCAGCAGCT
TGTTCCTGGTATGAGGCCAGG
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