FC918203

Overview
NameFC918203
Unique NameFC918203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DJB10_MOUSE (DnaJ homolog subfamily B member 10 OS=Mus musculus GN=Dnajb10 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  226 YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            YY IL V R A+ DD+KK+Y++ A++WHPDKNP   + AE KFK ++EAY+VLSD  KR+IYD YG EGL  +  G
Sbjct:    4 YYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGAGSG 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAC (Chaperone protein dnaJ OS=Thermoplasma acidophilum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 55/148 (37.16%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  214 MGVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPE--GLKASDFGTPSYHHPHDIKPCATRXXXXXXHR------XXXXXXXXXXXXIETQLLCTLEELYKGARKKMKISR 633
            M  DYY IL V R AT++++KK+++ LA KWHPD +P   Q+AE KFK ISEAY+VLSDP+KR++YD  G    G    +F   ++ H  D+                                + T L  TLE+ Y G  K++K  R
Sbjct:    1 MAKDYYKILGVDRNATDEEIKKAFRELAKKWHPDLHPENKQEAEEKFKEISEAYEVLSDPQKRRMYDQTGTVDFGAGGQNFNWDNFTHYSDLNDIFNDIFGGNFASDFFSGFGRGQREEQYDLDLYTNLDITLEDAYYGTEKRIKYRR 148          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_SULNB (Chaperone protein dnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  220 VDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            +DYY +L+VSR  +  +LKK+Y++LA+K+HPD+NP  +Q+AE KFK+++EAY VLSD  KR IYD YG EGL+    G
Sbjct:    4 MDYYEVLEVSRDCSGAELKKAYRKLALKYHPDRNP-DDQEAEEKFKIVNEAYQVLSDDEKRTIYDRYGKEGLEGQGMG 80          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  562 IETQLLCTLEELYKGARKKMKISRVLPDHFGKPITVQEILKIDIKPGWKKGTKITFPEKGNQEPGLPAADLIFVVEEKPHAVFQRDGNDLVVNHKISLLGALTGLS 879
            I   L  +LE+L+ G  KKMKISR + D  G+ +    IL+I +KPGWK GTKI F  +G+++P     D+ FV+ EKPH VF R G+DL +  ++SL  AL G S
Sbjct:  207 ITRPLNVSLEDLFTGCTKKMKISRHIIDASGQSVKADRILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFS 312          

HSP 2 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  229 YNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYG 423
            Y+ L+V   A+E +LKK+Y++LA+K+HPDKNP      E KFK IS AY+VLSDP++R++YD YG
Sbjct:    8 YDCLEVRPEASEAELKKAYRKLALKYHPDKNP----NGEKKFKEISLAYEVLSDPQRRKLYDQYG 68          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQA-EAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFGTPS 462
            +YY  L V    TED+LKK+Y+++A+K+HPDKN    + A EAKFK ISEAY+VLSDP KR++YD YG EG+K S F   S
Sbjct:    6 EYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGFHASS 86          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_PARUW (Chaperone protein dnaJ OS=Protochlamydia amoebophila (strain UWE25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            DYY IL+V+RGAT +++KK+Y++ A+++HPDKNP  +  AE +FK ISEAY+VLSD +KRQ+YD YG E L+ +  G
Sbjct:    3 DYYEILEVARGATPEEIKKAYRKKAVQYHPDKNPG-DADAEKRFKEISEAYEVLSDEKKRQVYDRYGKEALQGAAGG 78          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 57/150 (38.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  184 FTPTPTRSNRMGVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFGTPSYHHPHDIKPCATRXXXXXXHRXXXXXXXXXXXXIETQLLCTLEELYKGARKKMKISR 633
            F   P +S+     YY +L VS+ AT +DLKK+Y++ A+K HPDK          KFK I +AY+VL+DP KR+IYD YG EGLK    G    H P DI                          +   L  +LE+LY G  KK+ +SR
Sbjct:    2 FGRAPKKSDN--TKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPE-----KFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSR 144          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  220 VDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDF 450
            +DYY +L+V R A+ +++KK+Y++LA+K+HPD+NP  N +AE KFKLI+EAY VLSD  KR +YD YG  GL+   F
Sbjct:    4 IDYYELLEVDRNASFEEIKKAYRKLALKYHPDRNP-DNPEAEEKFKLINEAYQVLSDEEKRALYDQYGKAGLENQGF 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLAB (Chaperone protein dnaJ OS=Chlamydophila abortus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 40/71 (56.34%), Postives = 60/71 (84.51%), Query Frame = 1
Query:  220 VDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEG 432
            +DYY++L VS+ A+ +++KKSY++LA+K+HPDKNP  + +AE +FK +SEAY+VLSDP+KR+ YD YG +G
Sbjct:    1 MDYYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPG-DAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKDG 70          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_OPITP (Chaperone protein dnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFGT--------PSYHHPHDI 483
            DYY +L V +GA+E++LKK+Y++ A+++HPDKNP  N++AE  FK IS AY+VL DP KR  YD YGP   + +  G           +H P DI
Sbjct:    5 DYYELLGVQKGASEEELKKAYRKKAVQYHPDKNPG-NKEAEEMFKKISHAYEVLKDPEKRAAYDRYGPAAFEGAGAGAGMGGMRGGGGFHDPFDI 98          
The following BLAST results are available for this feature:
BLAST of FC918203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJB10_MOUSE3.230e-1956.58DnaJ homolog subfamily B member 10 OS=Mus musculus... [more]
DNAJ_THEAC7.195e-1937.16Chaperone protein dnaJ OS=Thermoplasma acidophilum... [more]
DNAJ_SULNB7.195e-1955.13Chaperone protein dnaJ OS=Sulfurovum sp. (strain N... [more]
PSI1_SCHPO9.397e-1946.23Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DNJA1_DICDI1.603e-1856.79DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNAJ_PARUW2.094e-1855.84Chaperone protein dnaJ OS=Protochlamydia amoebophi... [more]
DNJH2_ALLPO2.734e-1838.00DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNAJ_NITSB2.734e-1854.55Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_CHLAB7.955e-1856.34Chaperone protein dnaJ OS=Chlamydophila abortus GN... [more]
DNAJ_OPITP1.039e-1746.32Chaperone protein dnaJ OS=Opitutus terrae (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA17AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA17AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918203 ID=FC918203; Name=FC918203; organism=Citrus clementina; type=EST; length=879bp
CTGCGCTCTACATATTCATTCATTCATCGTAACGAATAACGATTAACTAA
CCTCCCTCTCCAGTCTCCACTCCTCCTACAATACAATAATAATACTTTGA
TGGTCCAGTTCTTATAACAAACACCTTCCTTATTATTACTCGGTCTCTGT
CTCTCGTTTGTACATCTCATGATTGAATTCTGATTCACACCGACACCGAC
ACGGTCGAATAGAATGGGAGTGGATTATTATAACATACTGAAAGTGAGCC
GCGGCGCTACTGAAGATGACTTGAAGAAGTCTTACAAAAGACTCGCCATG
AAGTGGCATCCCGACAAGAATCCCGCCACCAATCAACAGGCCGAAGCCAA
GTTTAAACTCATCTCCGAGGCCTATGACGTCTTGAGTGATCCCCGTAAGC
GCCAGATCTATGATCTCTACGGCCCCGAGGGTTTGAAGGCCTCCGACTTC
GGCACGCCCTCCTATCATCATCCCCACGACATCAAGCCCTGTGCTACTCG
CAACAATAATAACAACAATCATAGAGCTGGGGGTGCTGGGCCCAAGCCCA
CCCCGACGCCCATTGAGACCCAATTGCTGTGTACCTTGGAGGAGCTTTAC
AAAGGTGCTAGAAAAAAGATGAAGATTTCTCGCGTTCTTCCTGATCATTT
TGGCAAGCCAATCACTGTCCAGGAGATCCTGAAAATTGACATTAAACCTG
GCTGGAAGAAAGGAACCAAGATCACTTTCCCCGAGAAAGGAAACCAGGAA
CCTGGTCTACCTGCGGCTGATCTTATCTTTGTGGTGGAAGAGAAACCTCA
TGCTGTTTTCCAGAGGGACGGGAACGATCTGGTGGTCAATCACAAAATCT
CACTGCTGGGAGCCCTCACAGGGCTGTCT
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