FC918203

Overview
NameFC918203
Unique NameFC918203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOS1 (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYG 423
            DYY +L VSR A+ D+LKK+Y+  A + HPD+N A N QAEA+FK ++EAYDVL D  K+  YD YG
Sbjct:    5 DYYEVLGVSRTASADELKKAYRTKAKELHPDRN-ADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYG 70          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_RHISN (Chaperone protein dnaJ OS=Rhizobium sp. (strain NGR234) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            D Y  L V + A E +LK ++++LAMK+HPD+NP  +Q+AE  FK I+EAY+ L DP+KR  YD YG    +    G
Sbjct:    4 DLYETLGVKKNADEKELKSAFRKLAMKYHPDRNPG-DQEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMG 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_OCHA4 (Chaperone protein dnaJ OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  214 MGVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            M +DYY  L V R A +  LK ++++LAM++HPD+NP  N +AE KFK I EAY+ L DP+KR  YD +G    +    G
Sbjct:    1 MKIDYYEALGVERTADDKVLKTAFRKLAMEYHPDRNP-NNPEAERKFKEIGEAYETLKDPQKRAAYDRFGHAAFENGGMG 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPU (Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 35/76 (46.05%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDF 450
            DYY IL + + A E ++KK+Y++LAM+ HPD+  ++++++EAK + I+EAY+VLS+P K+ IYD YG E      F
Sbjct:    6 DYYKILGIDKSANEKEIKKAYRKLAMEHHPDR--SSSKESEAKMREINEAYEVLSNPEKKAIYDKYGHEAANNPGF 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNP (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. polymorphum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDK----NPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYG 423
            DYY +L V + A+E+D+KK+Y++ AMK+HPDK      A  + AE KFK I+EAY VLSD  K+Q YD +G
Sbjct:    5 DYYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSDNEKKQQYDQFG 75          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DJC21_HUMAN (DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  226 YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYD 414
            +Y  L V R A+E++LKK+Y++LA+KWHPDKN     +A  +FKLI  AYDVLSDP++R  YD
Sbjct:    4 HYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYD 66          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_THIDA (Chaperone protein dnaJ OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGL 435
            DYY +L V++ A+++++KK+Y++LAMK HPD+NP  +  AE KFK   +AY++LSD  KR  YD +G  G+
Sbjct:    5 DYYEVLGVAKNASDEEIKKAYRKLAMKHHPDRNPG-DHAAEDKFKEAKQAYEILSDSDKRAAYDQFGHAGV 74          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  214 MGVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKA------SDFG 453
            M  D+Y IL VSR A  ++LK++Y+RLA K+HPD N      AE KFK I+ AY+VLSDP+ R  YD +G  G+        SDFG
Sbjct:    1 MARDFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPG--AEEKFKEINRAYEVLSDPQARANYDRFGEAGVSGVGAAGFSDFG 84          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_SINMW (Chaperone protein dnaJ OS=Sinorhizobium medicae (strain WSM419) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  223 DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYGPEGLKASDFG 453
            D Y  L V + A E +LK ++++LAMK+HPD+NP  N +AE  FK I+EAY+ L DP+KR  YD YG    +    G
Sbjct:    4 DLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDN-EAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMG 79          
BLAST of FC918203 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOP2 (Chaperone protein dnaJ OS=Rhodopseudomonas palustris (strain HaA2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  226 YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDLYG 423
            YY  L+V R A E  LK ++++LAMKWHPD+NP  +  +E KFK I+EAY+VL D  KR  YD YG
Sbjct:    8 YYETLEVERSADESTLKSAFRKLAMKWHPDRNPG-DASSEIKFKEINEAYEVLKDGDKRAAYDRYG 72          
The following BLAST results are available for this feature:
BLAST of FC918203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_RHOS11.553e-1356.72Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RHISN1.553e-1346.75Chaperone protein dnaJ OS=Rhizobium sp. (strain NG... [more]
DNAJ_OCHA41.553e-1346.25Chaperone protein dnaJ OS=Ochrobactrum anthropi (s... [more]
DNAJ_MYCPU1.553e-1346.05Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=d... [more]
DNAJ_FUSNP1.553e-1352.11Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]
DJC21_HUMAN1.553e-1355.56DnaJ homolog subfamily C member 21 OS=Homo sapiens... [more]
DNAJ_THIDA2.028e-1347.89Chaperone protein dnaJ OS=Thiobacillus denitrifica... [more]
DNAJ_THEEB2.028e-1348.84Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
DNAJ_SINMW2.028e-1346.75Chaperone protein dnaJ OS=Sinorhizobium medicae (s... [more]
DNAJ_RHOP22.028e-1354.55Chaperone protein dnaJ OS=Rhodopseudomonas palustr... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA17AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA17AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918203 ID=FC918203; Name=FC918203; organism=Citrus clementina; type=EST; length=879bp
CTGCGCTCTACATATTCATTCATTCATCGTAACGAATAACGATTAACTAA
CCTCCCTCTCCAGTCTCCACTCCTCCTACAATACAATAATAATACTTTGA
TGGTCCAGTTCTTATAACAAACACCTTCCTTATTATTACTCGGTCTCTGT
CTCTCGTTTGTACATCTCATGATTGAATTCTGATTCACACCGACACCGAC
ACGGTCGAATAGAATGGGAGTGGATTATTATAACATACTGAAAGTGAGCC
GCGGCGCTACTGAAGATGACTTGAAGAAGTCTTACAAAAGACTCGCCATG
AAGTGGCATCCCGACAAGAATCCCGCCACCAATCAACAGGCCGAAGCCAA
GTTTAAACTCATCTCCGAGGCCTATGACGTCTTGAGTGATCCCCGTAAGC
GCCAGATCTATGATCTCTACGGCCCCGAGGGTTTGAAGGCCTCCGACTTC
GGCACGCCCTCCTATCATCATCCCCACGACATCAAGCCCTGTGCTACTCG
CAACAATAATAACAACAATCATAGAGCTGGGGGTGCTGGGCCCAAGCCCA
CCCCGACGCCCATTGAGACCCAATTGCTGTGTACCTTGGAGGAGCTTTAC
AAAGGTGCTAGAAAAAAGATGAAGATTTCTCGCGTTCTTCCTGATCATTT
TGGCAAGCCAATCACTGTCCAGGAGATCCTGAAAATTGACATTAAACCTG
GCTGGAAGAAAGGAACCAAGATCACTTTCCCCGAGAAAGGAAACCAGGAA
CCTGGTCTACCTGCGGCTGATCTTATCTTTGTGGTGGAAGAGAAACCTCA
TGCTGTTTTCCAGAGGGACGGGAACGATCTGGTGGTCAATCACAAAATCT
CACTGCTGGGAGCCCTCACAGGGCTGTCT
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