FC918221

Overview
NameFC918221
Unique NameFC918221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: COBW_PSEDE (Protein cobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.973e-29
Identity = 77/185 (41.62%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLV---AAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVD--AKHAGFHLDE--------VKPKGVVNEA------VEQIAYADRIIVNKTDL 861
            +IPAT+ITGFLG+GKTT++ ++L    GKRI +I NE+G++ +DG ++    A+    +DI+ L NGC+CCTV  D +  +++L+ +++ + DHI+IET+GLA P P+I  F   D I +EV +DGVVT+VD  A  AG   D+        V+   + +E+       +Q+  AD I++NKTDL
Sbjct:   10 KIPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGDLGVDGDVLKGCGAEACTEDDIIELTNGCICCTVADDFIPTMTKLL-ERENRPDHIIIETSGLALPQPLIAAFNWPD-IRSEVTVDGVVTVVDSAAVAAGRFADDHDKVDALRVEDDNLDHESPIEELFEDQLTAADLIVLNKTDL 192          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: P47K_PSECL (47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.412e-27
Identity = 67/185 (36.22%), Postives = 111/185 (60.00%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTT---GAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAED----AIFNEVKLDGVVTLVDAKHAGFHLD------------EVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            R+P T+++GFLG+GKTTLLN IL    G R+AVI N+  EV++D   V    +   G ++++ ++NGC+CCT+R DL+  IS+L   ++ +FD+++IE+TG++ P P+ +TF   D    ++    +LD +VT+VD       L+                + + +  +EQ+ YA+ I+VNK DL
Sbjct:    9 RLPVTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGRDELIEMSNGCICCTLRADLLEQISDLA--RQQRFDYLLIESTGISEPMPVAETFAFLDTEGFSLSELARLDTLVTVVDGSQFQALLESTDTVARADTEAHTSTRHLADLLIEQVEYANVILVNKRDL 191          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: COBW_PSEAE (Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.150e-27
Identity = 74/189 (39.15%), Postives = 110/189 (58.20%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGAED------IVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDA------------------KHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTD 858
            ++P TI+TGFLG+GKTTLL H+L    G+RIAVI NE+GE+ IDG ++   + G  +      +  L NGCLCCTV+ +   ++ ELV+ ++G  D I+IET+GLA P P++Q F   + I N   +D V+T+VD+                  +    +LD   P   + E  +Q+A AD +I+NK D
Sbjct:   31 KLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELGIDGEILKQCSIGCSEEEAQGRVFELANGCLCCTVQEEFFPVMRELVA-RRGDLDQILIETSGLALPKPLVQAFQWPE-IRNACTVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDPNLDHESPLHELFE--DQLASADLVILNKAD 215          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: YCIC_BACSU (Putative metal chaperone yciC OS=Bacillus subtilis GN=yciC PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 73/188 (38.83%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAK---TTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTF-YAEDAIFNEV----KLDGVVTLVDAKHAGFH--------------LDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP T+++G+LG+GKTTLLN IL    G +IAVI N+  EV+ID  LV  +   +   E +V ++NGC+CCT+R DL+  + +L   K G+FD+IVIE+TG++ P P+ QTF Y ++ +  ++    +LD +VT+VDA    +H              L E   + + +  ++QI + D +I+NK DL
Sbjct:    3 KIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLA--KDGRFDYIVIESTGISEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDANRF-WHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDVLILNKCDL 187          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: Y4527_DICDI (COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.164e-27
Identity = 68/200 (34.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  346 KIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLV----------AAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAE-----DAIFNEVKLDGVVTLVDA-------------KHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            K+    ++P ++++GFLGSGKTTLLN+IL + HG +IAVI N+  EV+ID  L+           A     E +V ++NGC+CCT+R DL+  +++L  +K  +FD+++IE++G++ P PI +TF  E     + + +  KLD +VT+VD              K       +   + +V+  ++Q+ +++ I++NK DL
Sbjct:   36 KVRGFEKLPVSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMSEVNIDSKLILENEFKITRTKATEKQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK--RFDYLIIESSGISEPLPIAETFTFEIDGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEFSNVILLNKCDL 233          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: YEIR_ECOLI (Uncharacterized protein yeiR OS=Escherichia coli (strain K12) GN=yeiR PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.162e-13
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  379 IITGFLGSGKTTLLNHILT-AEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNE-VKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAV-EQIAYADRIIVNKTD 858
            +ITGFLGSGKTT + H+L   +  ++ AV+ NE+GEV IDG+L+A      ++I     GC+CC     L   +      ++GK D ++IE TGL +P  I+    A   ++   + L   + ++D +     LDE   K   NE   +Q+A AD I+ NK+D
Sbjct:    6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEI---PGGCMCCV--NGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTA--PVYEPWIDLRATLCILDPR---LLLDE---KSASNENFRDQLAAADIIVANKSD 155          
The following BLAST results are available for this feature:
BLAST of FC918221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
COBW_PSEDE1.973e-2941.62Protein cobW OS=Pseudomonas denitrificans GN=cobW ... [more]
P47K_PSECL2.412e-2736.2247 kDa protein OS=Pseudomonas chlororaphis PE=3 SV... [more]
COBW_PSEAE3.150e-2739.15Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=... [more]
YCIC_BACSU7.016e-2738.83Putative metal chaperone yciC OS=Bacillus subtilis... [more]
Y4527_DICDI9.164e-2734.00COBW domain-containing protein DDB_G0274527 OS=Dic... [more]
YEIR_ECOLI1.162e-1335.58Uncharacterized protein yeiR OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA50AA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918221 ID=FC918221; Name=FC918221; organism=Citrus clementina; type=EST; length=869bp
CTCCACTCTCTGAAATATCTAAAACCCCCAGCAAAAACCTCCATTATCCA
ATTCCAAAACACGAGCCGCGGTGAAAAACAAAAAATGGCTTCTTCACTCT
CAACAGAAATGGCCACCACCTTCCTCTCCTTCACCGCTCGCCCACAAAAC
CCATTTGCTAAAATCCGAACCACTGTTCTCCCCGTCCTCTTCAAACCCAG
AGCCCGAAACTTATCCTACAAAACGATGGCGTCCTCAACTCACTCCAAAT
TTATCGCCGTCAAAGTCCCCAGACCCTACCGCCGGTTCACGGCCTCTGCT
TCTGCCGCCGCCACTACTGCCAGCGAGGACTCTGACTTGTTGACAAAGAT
TCCACCCGATAACAGAATTCCCGCCACCATAATCACCGGCTTTTTGGGTT
CGGGAAAGACGACATTGCTCAACCATATCTTGACTGCAGAACACGGGAAG
CGCATAGCTGTGATTGAGAACGAGTATGGTGAAGTGGACATTGATGGGTC
GTTAGTTGCTGCTAAAACTACTGGGGCTGAGGACATAGTTTTGCTTAACA
ATGGCTGTTTGTGCTGCACAGTAAGAGGTGATCTTGTGAGGATGATTTCA
GAATTAGTCAGTAAAAAGAAAGGGAAATTCGACCATATTGTAATTGAAAC
TACAGGATTGGCTAATCCGGCACCAATCATTCAGACATTTTATGCTGAGG
ATGCGATTTTTAATGAAGTGAAGTTGGATGGTGTTGTCACTTTGGTTGAT
GCTAAGCATGCTGGTTTTCATTTGGATGAGGTTAAGCCAAAAGGAGTTGT
CAATGAGGCAGTAGAGCAAATTGCATATGCAGACCGTATTATAGTAAATA
AGACTGATCTTNGTGGTGA
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