FC918223

Overview
NameFC918223
Unique NameFC918223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 1 
Query:  220 MDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY------------KSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMMKGGG 654
            M  AEL++VF+ +D NGDG+IS +EL   L  LG  +   E+ +M++ +D + DG VD+ EF A +             +             AF ++D + +G I+  EL  VL  LG K   +V DC RMI            + EFK+MM GGG
Sbjct:    1 MPMAELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDK--CSVADCSRMIRSVDADGDGCVNFDEFKKMMGGGG 155
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
[Close]
BLAST of FC918223 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:  229 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIXXXXXXXXXXXXAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKXXXXXXXXXXYKEFKQMM 642
            AE    F +FD +GDG I+ KEL   + +LG    + EL  MI  +D +G+G +D  EF  +                AF VFD++G+G+I+  EL+ V+ +LG K   T E+   MI +          Y+EF QMM
Sbjct:   11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of FC918223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
CML18_ORYSJ8.744e-1534.39Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CALM_XENLA8.744e-1534.78Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA8.744e-1534.78Calmodulin OS=Torpedo californica PE=1 SV=2[more]
CALM_SHEEP8.744e-1534.78Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3[more]
CALM_RAT8.744e-1534.78Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2[more]
CALM_RABIT8.744e-1534.78Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]
CALM_PONAB8.744e-1534.78Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PERFV8.744e-1534.78Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]
CALM_ONCSP8.744e-1534.78Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MOUSE8.744e-1534.78Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918223 ID=FC918223; Name=FC918223; organism=Citrus clementina; type=EST; length=912bp
ATAGCGTCCTCCCCCGCAGCGCCCCTAATTTAAGCGTTCATCATATATTT
TGTTCCTCAAATGCGCTCCATTTTGTTGAGAATTTTCCTTCTTTACACTT
TCATCCTTCATTTGCTCCCAAAGAAGCTCCGTCGCTTCCTCCCCCGTTCC
TGGTTCCCCGCCCCCGCTCTGGGCCCCAGCCTGTCGTCACAGTCCAACAC
GAACCCGACGCGATCGACAATGGACCAGGCAGAGCTGGACCGGGTTTTCC
AAATGTTCGACCACAACGGAGACGGGCGGATATCGAAGAAGGAGCTGAAC
GACTCGTTGGAGAACCTGGGAATATACATTCCGGACGTGGAGCTGACCCA
GATGATCGAGCGGATCGACGTCAACGGAGACGGCTGCGTCGACATCGACG
AGTTCGGGGCGCTGTACAAGTCCATCATGGAAGAGAAAGACGAGGAGGAA
GACATGAAGGAAGCGTTCAACGTGTTTGACCAGAACGGCGACGGGTTCAT
CACGTTTGACGAGTTGAAATCCGTGTTGGGGTCCCTGGGGCTCAAGCAAG
GCCGGACCGTAGAGGATTGCAAGCGGATGATCATGAAGGTCGACGTGGAC
GGTGACGGCATGGTTGATTACAAGGAGTTCAAGCAGATGATGAAAGGCGG
TGGGTTCAGTGCTTTGACTTGATTCAATTTAGAGAGGATTTTGTCTTTTT
TTTTATTCCATCATAATCAATGAAATCAATTTGTTGTTGTAAATATAAAA
TTTCCGAAACTTACAATCATACGATTTGGGTGACGGTGATGATGATGATG
ATAATGATGATTGATGATCATTCCGACGCCGTAACGCCAAGGGAGACGTC
GTGTCGTGTCGTGTCGTGTGACGAGTCAGTCGGGTAATATTTACAACTAT
CTATTAAAATCA
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