FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 86/253 (33.99%), Postives = 131/253 (51.78%), Query Frame = 1
Query:  124 GQIQRALQTLDCG-------AYGRLIQHFTDYRLPRQAKQLHARLI--FHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNR-DIVSWNSMIAGYSQGGFYEECKALFREM-LNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            G +  A Q LD         A+  +++     R   Q +QLH+R+   F S   D FLA KL+  Y K  SL  A  VFD++  ++ F++N M+ AY  +      L L+ ++     + +     +   +LKA   L RD R   E+HS +++ G  S+ F+VN L++ Y++ DD+++AR LFDG   + D V WNS+++ YS  G   E   LFREM +  P   P+  T+VS L AC   S    G E+H
Sbjct:   62 GVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRV---EGVPLGLSSFPALLKACAKL-RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPA--PNSYTIVSALTACDGFSYAKLGKEIH 307          

HSP 2 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 58/210 (27.62%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +LHA +I H    +  + + LI+ YSK N        F ++  K + S+  ++  Y+ +D + + L LF  +A    + ++ D   +  +L+A + + +     KE+H ++LR GL  ++ + N L+  Y +C ++  A  +F+ +  +D+VSW SMI+  +  G   E   LFR M+ +  L  D V ++ +L A    S +  G E+H
Sbjct:  407 ELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK---KRMEIDEMILGSILRA-SSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-LSADSVALLCILSAAASLSALNKGREIH 610          

HSP 3 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 63/245 (25.71%), Postives = 123/245 (50.20%), Query Frame = 1
Query:  118 NSGQIQRALQTLDCGAYGRLIQHFTDYRLPRQAKQLHARLIFHSV-APDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            NS  I  AL   D  +Y +L             K++HA ++  S  + + ++ + LI  Y++   + QA  +  ++ +  + ++N+++  Y  + MY + L  FS + ++     K D  ++T ++ A +G   +     E+H+YV++ G DS+L + N LI  YS+C+        F  M ++D++SW ++IAGY+Q   + E   LFR++     +  D + + S+L A      ++   E+H
Sbjct:  283 NSYTIVSALTACDGFSYAKL------------GKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGH---KSDEVSMTSIIAA-SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKR-MEIDEMILGSILRASSVLKSMLIVKEIH 510          

HSP 4 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 49/201 (24.38%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            K++H  ++   +  D  + ++L++ Y K  ++  A  VF+ I  K + S+ +M+ + +++   ++ + LF  +  +    L  D+  + C+L A   L   ++  +E+H Y+LR G      +   ++  Y+ C D+ SA+A+FD +  + ++ + SMI  Y   G  +    LF +M +  V  PD ++ +++L+AC  +
Sbjct:  507 KEIHCHILRKGLL-DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVET---GLSADSVALLCILSAAASLSALNK-GREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV-SPDHISFLALLYACSHA 701          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 65/218 (29.82%), Postives = 122/218 (55.96%), Query Frame = 1
Query:  169 GRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSS 822
            G+++  + D R  R    +H+R+I   +  ++ L  KL+  Y+    +  AR VFD+I  +++   N M+ +Y  +  Y + +++F ++      +++PD++T  CVLKA +         +++H    + GL S+LF+ NGL++ Y +C  ++ AR + D MS RD+VSWNS++ GY+Q   +++   + REM  S  +  D  T+ S+L A   ++
Sbjct:   46 GQVLDTYPDIRTLRT---VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC---NVRPDHYTFPCVLKACS-CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTT 255          

HSP 2 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 54/173 (31.21%), Postives = 94/173 (54.34%), Query Frame = 1
Query:  301 SNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            + +++  + +F K+  KS+ S+N M+  Y  + M  + + L+S + +      +PD  +IT VL A  G        K++H Y+ R  L  +L L N LI  Y++C  +  AR +F+ M +RD+VSW +MI+ Y   G   +  ALF ++ +S ++ PD +  V+ L AC  +
Sbjct:  256 TENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEAD---GFEPDAVSITSVLPAC-GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHA 423          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 61/176 (34.66%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  322 RHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R VF+ +  K + SYN ++  Y+   MY D LR+   + ++   DLKPD+FT++ VL   +  + D    KE+H YV+R G+DS +++ + L+  Y++   +  +  +F  +  RD +SWNS++AGY Q G Y E   LFR+M+ + V +P  V   SV+ AC   + +  G ++H
Sbjct:  196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTT---DLKPDSFTLSSVLPIFSE-YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV-KPGAVAFSSVIPACAHLATLHLGKQLH 366          

HSP 2 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 64/208 (30.77%), Postives = 114/208 (54.81%), Query Frame = 1
Query:  187 FTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            F++Y    + K++H  +I   +  D ++ S L++ Y+KS  +  +  VF ++  +   S+N+++  Y  +  Y + LRLF  + ++    +KP     + V+ A   L       K++H YVLR G  S++F+ + L+  YS+C ++ +AR +FD M+  D VSW ++I G++  G   E  +LF EM    V +P+ V  V+VL AC
Sbjct:  252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTA---KVKPGAVAFSSVIPACAHL-ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV-KPNQVAFVAVLTAC 454          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26
Identity = 65/215 (30.23%), Postives = 117/215 (54.42%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLI-QARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRD--SRFAKEVHSYVL-RCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            K +H+ +I   +  D  + + L++ Y+K   +   A   FD I  K + S+NA++  +S ++M  D  R F  +     +  +P+  TI  VL     + ++   R  +++HSYV+ R  L + +F+ N L++FY R   +  A +LF  M ++D+VSWN +IAGY+    + +   LF  +++   + PD VT++S+L  C Q +D+  G E+H
Sbjct:  142 KSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLK---EPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIH 353          

HSP 2 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 63/216 (29.17%), Postives = 112/216 (51.85%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDN-FLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCG-LDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R  +Q+H+ ++  S    + F+ + L++FY +   + +A  +F ++ SK + S+N ++  Y+ +  +    +LF +L   +  D+ PD+ TI  +L     L  D    KE+HSY+LR   L     + N LI+FY+R  D ++A   F  MS +DI+SWN+++  ++      +   L   +LN  +   D VT++S+L  C     I    EVH
Sbjct:  244 RSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLV--HKGDVSPDSVTIISILPVCAQL-TDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITL-DSVTILSLLKFCINVQGIGKVKEVH 455          

HSP 3 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 51/182 (28.02%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  268 LASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDV-ASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            ++  ++N Y+K   +   + +F ++ S     +N +L   SV     +T+R F ++   ++ + KP + T   VL     L  DS   K +HSY+++ GL+    + N L++ Y++   +   A   FDG++++D+VSWN++IAG+S+     +    F  ML  P   P+  T+ +VL  C
Sbjct:   58 VSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSV-SCGRETMRFFKAM--HFADEPKPSSVTFAIVLPLCVRL-GDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPT-EPNYATIANVLPVC 234          

HSP 4 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 63/246 (25.61%), Postives = 117/246 (47.56%), Query Frame = 1
Query:  217 KQLHARLIFHS-VAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGL---DSSLFLVNGLITFYSRCDDVASARALFDGMS-NRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------------------------------LRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            K++H+ ++ HS +  D  + + LI+FY++      A   F  +++K I S+NA+L A++        L L   L +   + +  D+ TI  +LK    +    +  KEVH Y ++ GL   +    L N L+  Y++C +V  A  +F G+S  R +VS+NS+++GY   G +++ + LF EM  + +                              +RP+ VT++++L  C Q + +    + H
Sbjct:  350 KEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLN---EAITLDSVTILSLLKFCINVQGIGK-VKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCH 591          

HSP 5 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 49/210 (23.33%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  226 HARLIFHSVAPDNFLAS--KLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +A  IF  ++    L S   L++ Y  S S   A+ +F ++++  + +++ M+  Y+      + + +F  + +   + ++P+  TI  +L     L       ++ H Y++R GL   + L   L+  Y++C  +  A ++F   + RD+V + +M+AGY+  G  +E   ++  M  S + +PD V + ++L AC  +  I  G++++
Sbjct:  488 YAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQA---RGMRPNTVTIMNLLPVCAQL-ASLHLVRQCHGYIIRGGL-GDIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNI-KPDHVFITTMLTACCHAGLIQDGLQIY 691          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26
Identity = 69/214 (32.24%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKS-IFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q  Q+H+ +I      D  + + L+  Y+  + L    ++F+   + +   S+N +L A   H+   + LRLF  +  S   + +PD+ T+  +L+    +    +   +VH Y L+ GL    F+ NGLI  Y++C  +  AR +FD M NRD+VSW+++I GY+Q GF EE   LF+EM  S  + P+ VT V VL AC     +  G++++
Sbjct:  389 QGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVS---ECEPDHITMGNLLRGCVEI-SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEM-KSAGIEPNHVTFVGVLTACSHVGLVEEGLKLY 597          

HSP 2 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 67/228 (29.39%), Postives = 116/228 (50.88%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y  LI   +  R   Q +++H  ++  +   D  L + +++ Y K  SL  AR VFD +  +++ SY +++  YS +    + +RL+  +     +DL PD F    ++KA      D    K++H+ V++    S L   N LI  Y R + ++ A  +F G+  +D++SW+S+IAG+SQ GF  E  +  +EML+  V  P+     S L AC       +G ++H
Sbjct:   70 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQ---EDLVPDQFAFGSIIKACASS-SDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 293          

HSP 3 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 59/229 (25.76%), Postives = 107/229 (46.72%), Query Frame = 1
Query:  163 AYGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            A+G +I+           KQLHA++I    +      + LI  Y + N +  A  VF  I  K + S+++++  +S      + L     + S       P+ +     LKA + L R   +  ++H   ++  L  +      L   Y+RC  + SAR +FD +   D  SWN +IAG +  G+ +E  ++F +M +S  + PD +++ S+L A  +   +  GM++H
Sbjct:  170 AFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV--FHPNEYIFGSSLKACSSLLRPD-YGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI-PDAISLRSLLCAQTKPMALSQGMQIH 394          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.780e-26
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            KQ+H  ++  +     F+ S L++ Y+K+  + +AR +F+ +  + + S  A++  Y+   +  + L +F  L   +S+ + P+  T   +L AL+GL       K+ H +VLR  L     L N LI  YS+C +++ AR LFD M  R  +SWN+M+ GYS+ G   E   LFR M +   ++PD VT+++VL  C
Sbjct:  173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL---HSEGMSPNYVTYASLLTALSGLALLDH-GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 366          

HSP 2 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 76/253 (30.04%), Postives = 132/253 (52.17%), Query Frame = 1
Query:  118 NSGQIQRALQTL-----DCGAYG--RLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDS--RFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            ++G++Q AL  +     + G +G   L+    D R  R  +++HA +I     P  +L ++L+ FY K + L  AR V D++  K++ S+ AM+  YS     ++ L +F+ +  S   D KP+ FT   V   LT   R S     K++H  +++   DS +F+ + L+  Y++   +  AR +F+ +  RD+VS  ++IAGY+Q G  EE   +F   L+S  + P+ VT  S+L A    + +  G + H
Sbjct:   32 SNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRS---DGKPNEFTFATV---LTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHR-LHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.780e-26
Identity = 62/241 (25.73%), Postives = 122/241 (50.62%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV------------------------------LRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            K+++A +I H ++  +F+ +K+++F  K   +  A  +F+++++ ++F YN+++ AY+ + +Y D +R++  L     +   PD FT   + K+   L       K+VH ++ + G    +   N LI  Y + DD+  A  +FD M  RD++SWNS+++GY++ G  ++ K LF  ML+  +                              + PD ++++SVL +C Q   +  G  +H
Sbjct:   27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFE--LPDRFTFPFMFKSCASL-GSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIH 264          

HSP 2 Score: 87.8113 bits (216), Expect = 8.299e-17
Identity = 63/231 (27.27%), Postives = 105/231 (45.45%), Query Frame = 1
Query:  217 KQLHARLI-----FHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYS-----------VHDMYTDTLRLFSSLASSYS-----------------QDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            KQ+H  L      FH V  +      LI+ Y K + L+ A  VFD++  + + S+N++L  Y+            H M   T+  ++++ S Y+                   ++PD  ++  VL +   L       K +H Y  R G      + N LI  YS+C  ++ A  LF  M  +D++SW++MI+GY+  G        F EM  + V +P+G+T + +L AC
Sbjct:  129 KQVHGHLCKFGPRFHVVTEN-----ALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQL-GSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKV-KPNGITFLGLLSAC 352          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.668e-25
Identity = 72/248 (29.03%), Postives = 129/248 (52.02%), Query Frame = 1
Query:  109 LRANSGQIQRALQTLDCGAYGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSS-LASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            LR +S  ++ +    D   Y  L++  T ++L  Q + +HA ++      D  + + L+N Y+K  SL +AR VF+K+  +   ++  ++  YS HD   D L  F+  L   YS    P+ FT++ V+KA     R      ++H + ++CG DS++ + + L+  Y+R   +  A+ +FD + +R+ VSWN++IAG+++    E+   LF+ ML     RP   +  S+  AC  +  +  G  VH
Sbjct:   44 LRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYS----PNEFTLSSVIKA-AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG-FRPSHFSYASLFGACSSTGFLEQGKWVH 285          

HSP 2 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 57/202 (28.22%), Postives = 102/202 (50.50%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKAL--TGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            QLH   +      +  + S L++ Y++   +  A+ VFD + S++  S+NA++  ++        L LF  +        +P +F+   +  A   TG     ++   VH+Y+++ G     F  N L+  Y++   +  AR +FD ++ RD+VSWNS++  Y+Q GF +E    F EM    + RP+ ++ +SVL AC  S
Sbjct:  182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD---GFRPSHFSYASLFGACSSTGFLEQGKW---VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI-RPNEISFLSVLTACSHS 376          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 65/211 (30.81%), Postives = 119/211 (56.40%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +Q+H  ++   V  +  + S L+ FY++   L  A   FD +  K + S+ A++ A S        + +F  + + +     P+ FT+  +LKA +   +  RF ++VHS V++  + + +F+   L+  Y++C +++  R +FDGMSNR+ V+W S+IA +++ GF EE  +LFR M    ++  + +TVVS+L ACG    ++ G E+H
Sbjct:  204 RQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHW---FLPNEFTVCSILKACSEE-KALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLI-ANNLTVVSILRACGSVGALLLGKELH 408          

HSP 2 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 51/214 (23.83%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R  +Q+H+ ++   +  D F+ + L++ Y+K   +   R VFD +++++  ++ +++ A++      + + LF  +   +   L  +N T+  +L+A  G        KE+H+ +++  ++ ++++ + L+  Y +C +   A  +   + +RD+VSW +MI+G S  G   E     +EM+   V  P+  T  S L AC  S  ++ G  +H
Sbjct:  301 RFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRH---LIANNLTVVSILRA-CGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGV-EPNPFTYSSALKACANSESLLIGRSIH 509          

HSP 3 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 57/219 (26.03%), Postives = 103/219 (47.03%), Query Frame = 1
Query:  157 CGAYGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACG 813
            CG+ G L+            K+LHA++I +S+  + ++ S L+  Y K      A +V  ++ S+ + S+ AM+   S     ++ L     +     + ++P+ FT +  LKA           + +HS   +    S++F+ + LI  Y++C  V+ A  +FD M  +++VSW +MI GY++ GF  E   L   M  +     D     ++L  CG
Sbjct:  395 CGSVGALLL----------GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQ---EGVEPNPFTYSSALKACANS-ESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRM-EAEGFEVDDYIFATILSTCG 598          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            + AK LHARL+      +  +++KL+N Y    ++  ARH FD I ++ ++++N M+  Y      ++ +R FS      S  L PD  T   VLKA   +   ++    +H   L+ G    +++   LI  YSR   V +AR LFD M  RD+ SWN+MI+GY Q G  +E        L++ +   D VTVVS+L AC ++ D   G+ +H
Sbjct:   68 QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM--LSSGLTPDYRTFPSVLKACRTVIDGNK----IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIH 270          

HSP 2 Score: 107.071 bits (266), Expect = 1.322e-22
Identity = 67/241 (27.80%), Postives = 125/241 (51.87%), Query Frame = 1
Query:  130 IQRALQTLDCGAYGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCG-LDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +   L+ +D      L+   T+     +   +H+  I H +  + F+++KLI+ Y++   L   + VFD++  + + S+N+++ AY +++     + LF  +  S  Q   PD  T+  +   L+ L  D R  + V  + LR G     + + N ++  Y++   V SARA+F+ + N D++SWN++I+GY+Q GF  E   ++  M     +  +  T VSVL AC Q+  +  GM++H
Sbjct:  238 LSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ---PDCLTLISLASILSQL-GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474          

HSP 3 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 49/189 (25.93%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  259 DNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALT--GLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            D  + + ++  Y+K   +  AR VF+ + +  + S+N ++  Y+ +   ++ + +++ +      ++  +  T   VL A +  G  R      ++H  +L+ GL   +F+V  L   Y +C  +  A +LF  +   + V WN++IA +   G  E+   LF+EML+  V +PD +T V++L AC  S
Sbjct:  383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEE--GEIAANQGTWVSVLPACSQAGALRQGM---KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV-KPDHITFVTLLSACSHS 565          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP296_ARATH3.361e-2633.99Pentatricopeptide repeat-containing protein At3g63... [more]
PP271_ARATH4.390e-2629.82Putative pentatricopeptide repeat-containing prote... [more]
PP251_ARATH4.390e-2634.66Putative pentatricopeptide repeat-containing prote... [more]
PP370_ARATH7.489e-2630.23Putative pentatricopeptide repeat-containing prote... [more]
PP280_ARATH7.489e-2632.24Pentatricopeptide repeat-containing protein At3g53... [more]
PP227_ARATH9.780e-2632.83Putative pentatricopeptide repeat-containing prote... [more]
PP165_ARATH9.780e-2625.73Pentatricopeptide repeat-containing protein At2g20... [more]
PP252_ARATH1.668e-2529.03Pentatricopeptide repeat-containing protein At3g24... [more]
PP319_ARATH2.846e-2530.81Pentatricopeptide repeat-containing protein At4g18... [more]
PP348_ARATH6.339e-2533.64Pentatricopeptide repeat-containing protein At4g33... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
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