FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22765 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 46/182 (25.27%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  211 QAKQLHARLI---FHSVAPDNFLASKLINFYSK--SNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALF 741
            QAKQ+HA+L+   ++ + P   L  + ++F  +   N +   + +         FS+  ++   S H  + +T+ ++  + +S    + P +  +T VL+A  G   +    K +H+  L+ GL   +++  GL+  YSR   +  A+  FD ++ ++ VSWNS++ GY + G  +E + +F
Sbjct:   18 QAKQVHAQLVVNRYNHLEP--ILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVRFLSQHRKFKETVDVYIDMHNS---GIPPSSHAVTSVLRAC-GKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVF 193          

HSP 2 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 59/205 (28.78%), Postives = 104/205 (50.73%), Query Frame = 1
Query:  229 ARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLHACGQSSDIVFG 837
            A+  F  +A  N ++ + L++ Y +S  L +AR VFDKI  K   S+N ++ +Y+      +   LFS++         P ++ I      L G + + R  K   +Y       + +  +  +I+ Y++  DV SA  LF  MS +D + +++MIA Y+Q G  ++   LF +ML  +  ++PD +T+ SV+ A  Q  +  FG
Sbjct:  158 AKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLK-----SPASWNI------LIGGYVNCREMKLARTYFDAMPQKNGVSWIT-MISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFG 350          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR24_ARATH (Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 47/162 (29.01%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  334 DKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCG-LDSSLFLVNGLITFYSRCDDVASARALFDGMSN--RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            +K+ ++++ S+  ++  Y+  D   + + LFS + +  +  +KP+  TI  +L A+  L  D +    VH+YV + G +   + + N LI  Y++C  + SA   F  + N  +++VSW +MI+ ++  G  +E  ++F++M     L+P+ VT++SVL+AC
Sbjct:  213 EKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDA--IKPNEITILAILPAVWNL-GDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG-LKPNRVTMISVLNAC 370          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP336_ARATH9.495e-1325.27Pentatricopeptide repeat-containing protein At4g22... [more]
PPR24_ARATH1.620e-1229.01Pentatricopeptide repeat-containing protein At1g09... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
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