FC918250
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22765 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13 Identity = 46/182 (25.27%), Postives = 93/182 (51.10%), Query Frame = 1 Query: 211 QAKQLHARLI---FHSVAPDNFLASKLINFYSK--SNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALF 741 QAKQ+HA+L+ ++ + P L + ++F + N + + + FS+ ++ S H + +T+ ++ + +S + P + +T VL+A G + K +H+ L+ GL +++ GL+ YSR + A+ FD ++ ++ VSWNS++ GY + G +E + +F Sbjct: 18 QAKQVHAQLVVNRYNHLEP--ILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVRFLSQHRKFKETVDVYIDMHNS---GIPPSSHAVTSVLRAC-GKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVF 193 HSP 2 Score: 73.1738 bits (178), Expect = 2.115e-12 Identity = 59/205 (28.78%), Postives = 104/205 (50.73%), Query Frame = 1 Query: 229 ARLIFHSVAPDNFLA-SKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLHACGQSSDIVFG 837 A+ F +A N ++ + L++ Y +S L +AR VFDKI K S+N ++ +Y+ + LFS++ P ++ I L G + + R K +Y + + + +I+ Y++ DV SA LF MS +D + +++MIA Y+Q G ++ LF +ML + ++PD +T+ SV+ A Q + FG Sbjct: 158 AKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLK-----SPASWNI------LIGGYVNCREMKLARTYFDAMPQKNGVSWIT-MISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFG 350
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR24_ARATH (Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12 Identity = 47/162 (29.01%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 334 DKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCG-LDSSLFLVNGLITFYSRCDDVASARALFDGMSN--RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810 +K+ ++++ S+ ++ Y+ D + + LFS + + + +KP+ TI +L A+ L D + VH+YV + G + + + N LI Y++C + SA F + N +++VSW +MI+ ++ G +E ++F++M L+P+ VT++SVL+AC Sbjct: 213 EKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDA--IKPNEITILAILPAVWNL-GDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG-LKPNRVTMISVLNAC 370 The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bpback to top |