FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 66/201 (32.84%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            R     H   +      D +L S L+  Y  S  +  A  VF+++  +++ S+ AM+  ++        L+L+S +  S S    P+++T T +L A TG     +  + VH   L  GL S L + N LI+ Y +C D+  A  +FD  SN+D+VSWNSMIAGY+Q G   +   LF  M+     +PD +T + VL +C
Sbjct:  137 RTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSD---PNDYTFTALLSACTGSGALGQ-GRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSC 333          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 66/225 (29.33%), Postives = 113/225 (50.22%), Query Frame = 1
Query:  175 LIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +I+   D    R  K +H   +      D ++ + L+ FYSK   +  AR VFD++  KSI ++N+++  +  + +  + +++F  +  S     +PD+ T   +L A       S     VH Y++  GLD ++ L   LI  YSRC DV  AR +FD M   ++ +W +MI+ Y   G+ ++   LF +M +     P+ VT V+VL AC  +  +  G  V+
Sbjct:  113 VIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRES---GFEPDSATFVSLLSACAQTGAVS-LGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVY 333          

HSP 2 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSY----SQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +Q +Q+HA LI         L +KLI     + ++     +F  +     F +N+++ +       T  LRL     + Y    S ++ P N+T T V+K+   L    R  K VH + +  G     ++   L+TFYS+C D+  AR +FD M  + IV+WNS+++G+ Q G  +E   +F +M  S    PD  T VS+L AC Q+  +  G  VH
Sbjct:   23 KQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS-------TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL-SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG-FEPDSATFVSLLSACAQTGAVSLGSWVH 231          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 64/200 (32.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            + K++HA L     +   ++ + L++ Y++   +  A +VF  +  +++ S++AM+  Y+ +    + LR F  +    ++D  P++ T+  VL+A   L    +  K +H Y+LR GLDS L +++ L+T Y RC  +   + +FD M +RD+VSWNS+I+ Y   G+ ++   +F EML +    P  VT VSVL AC
Sbjct:  200 KGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRE-TKDSSPNSVTMVSVLQACASLAALEQ-GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGA-SPTPVTFVSVLGAC 396          

HSP 2 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 71/216 (32.87%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  214 AKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTG---LFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREML-NSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            A ++H  ++ +    D FLA+KLI  YS   S+  AR VFDK   ++I+ +NA+  A ++     + L L+  +       ++ D FT T VLKA              KE+H+++ R G  S ++++  L+  Y+R   V  A  +F GM  R++VSW++MIA Y++ G   E    FREM+  +    P+ VT+VSVL AC   + +  G  +H
Sbjct:   96 ALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI---GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIH 308          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.412e-24
Identity = 69/229 (30.13%), Postives = 114/229 (49.78%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGL-DSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            YG LI   T      Q K  H  L+   +   + L + L++ Y K   +  AR VF++ +   +  + AM++ Y+ +    + L LF  +      ++KP+  TI  VL    GL  +    + VH   ++ G+ D+++   N L+  Y++C     A+ +F+  S +DIV+WNS+I+G+SQ G   E   LF  M NS  + P+GVTV S+  AC     +  G  +H
Sbjct:  245 YGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGV---EIKPNCVTIASVLSGC-GLIENLELGRSVHGLSIKVGIWDTNV--ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRM-NSESVTPNGVTVASLFSACASLGSLAVGSSLH 466          

HSP 2 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 61/228 (26.75%), Postives = 123/228 (53.95%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            + + ++  T+ +     K++H +L+    + DN + + L++ Y+K   +  A  VF+ IT +++  + +M+  Y  +D+  + L LF+ +  +   ++  + +T   ++ A T L    +  K  H  +++ G++ S  LV  L+  Y +C D+++AR +F+  S+ D+V W +MI GY+  G   E  +LF++M     ++P+ VT+ SVL  CG   ++  G  VH
Sbjct:  145 FSKALKACTELQDLDNGKKIHCQLV-KVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN---NVLGNEYTYGTLIMACTKLSALHQ-GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM-KGVEIKPNCVTIASVLSGCGLIENLELGRSVH 366          

HSP 3 Score: 88.5817 bits (218), Expect = 4.865e-17
Identity = 53/189 (28.04%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  259 DNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGL--DSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            D  +A+ L++ Y+K      A++VF+  + K I ++N+++  +S +    + L LF  + S   + + P+  T+  +  A   L         +H+Y ++ G    SS+ +   L+ FY++C D  SAR +FD +  ++ ++W++MI GY + G       LF EML     +P+  T  S+L ACG +
Sbjct:  376 DTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNS---ESVTPNGVTVASLFSACASL-GSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQ-QKPNESTFTSILSACGHT 559          

HSP 4 Score: 82.0333 bits (201), Expect = 4.554e-15
Identity = 58/211 (27.49%), Postives = 104/211 (49.29%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +Q H  L  + +  D  +A+KL++ Y        AR VFD+I     + +  ML  Y ++    + ++L+  L        + D+   +  LKA T L +D    K++H  +++     ++ L  GL+  Y++C ++ SA  +F+ ++ R++V W SMIAGY +    EE   LF  M  + VL  +  T  +++ AC + S +  G   H
Sbjct:   61 RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLL---MKHGFRYDDIVFSKALKACTEL-QDLDNGKKIHCQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNE-YTYGTLIMACTKLSALHQGKWFH 265          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 67/214 (31.31%), Postives = 111/214 (51.87%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R  +  H  +I H    ++F++S L   Y  +   + AR VFD++    +  + A+L A+S +D+Y + L LF   A    + L PD  T   VL A  G  R  +  KE+H  ++  G+ S++ + + L+  Y +C  V  AR +F+GMS ++ VSW++++ GY Q G +E+   +FREM        D     +VL AC   + +  G E+H
Sbjct:  180 RLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF--YAMHRGKGLVPDGSTFGTVLTAC-GNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK-----DLYCFGTVLKACAGLAAVRLGKEIH 385          

HSP 2 Score: 105.145 bits (261), Expect = 5.023e-22
Identity = 59/222 (26.58%), Postives = 117/222 (52.70%), Query Frame = 1
Query:  154 DCGAYGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            D   +G ++    + R  +Q K++H +LI + +  +  + S L++ Y K  S+ +AR VF+ ++ K+  S++A+L  Y  +  +   + +F  +          D +    VLKA  GL    R  KE+H   +R G   ++ + + LI  Y +   + SA  ++  MS R++++WN+M++  +Q G  EE  + F +M+   + +PD ++ +++L ACG +
Sbjct:  264 DGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK-------DLYCFGTVLKACAGLAA-VRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI-KPDYISFIAILTACGHT 476          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.146e-24
Identity = 68/228 (29.82%), Postives = 111/228 (48.68%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y  L+ HF   +   + K LH  +I       + L++  +  Y+    +  AR +F+++   S+ SYN ++  Y    +Y D + +F  + S   + + PD +T   V KA  G  +  +    VH  +LR       ++ N L+  Y     V  AR +FD M NRD++SWN+MI+GY + G+  +   +F  M+N  V   D  T+VS+L  CG   D+  G  VH
Sbjct:   18 YQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVT-YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCV-PDGYTYPFVAKA-AGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESV-DLDHATIVSMLPVCGHLKDLEMGRNVH 241          

HSP 2 Score: 97.8265 bits (242), Expect = 8.019e-20
Identity = 59/209 (28.23%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  223 LHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +H R++      D ++ + L+  Y     +  AR VFD + ++ + S+N M+  Y  +    D L +F  + +  S DL  D+ TI  +L  + G  +D    + VH  V    L   + + N L+  Y +C  +  AR +FD M  RD+++W  MI GY++ G  E    L R ++    +RP+ VT+ S++  CG +  +  G  +H
Sbjct:  139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNE-SVDL--DHATIVSMLP-VCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCR-LMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLH 342          

HSP 3 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 60/212 (28.30%), Postives = 104/212 (49.06%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGM----SNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGM 840
            K LH   +   V  D  + + LI+ Y+K   +     VF   +      ++A++     +++ +D L LF  +     +D++P+  T+  +L A   L  D R A  +H Y+ + G  SSL    GL+  YS+C  + SA  +F+G+     ++D+V W ++I+GY   G       +F EM+ S V  P+ +T  S L+AC  S  +  G+
Sbjct:  339 KCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRR---EDVEPNIATLNSLLPAYAAL-ADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGV-TPNEITFTSALNACSHSGLVEEGL 545          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.146e-24
Identity = 65/211 (30.81%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +Q+H   I + +     L++ L+  YSK  SL +A  +FD    ++  +++AM+  YS +    + ++LFS +   +S  +KP  +TI  VL A + +       K++HS++L+ G +  LF    L+  Y++   +A AR  FD +  RD+  W S+I+GY Q    EE   L+R M  + ++ P+  T+ SVL AC   + +  G +VH
Sbjct:  241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM---FSAGIKPSEYTIVGVLNACSDICYLEE-GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGII-PNDPTMASVLKACSSLATLELGKQVH 446          

HSP 2 Score: 97.8265 bits (242), Expect = 8.019e-20
Identity = 59/209 (28.23%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFG 837
            + KQLH+ L+        F  + L++ Y+K+  L  AR  FD +  + +  + +++  Y  +    + L L+  + ++    + P++ T+  VLKA + L       K+VH + ++ G    + + + L T YS+C  +     +F    N+D+VSWN+MI+G S  G  +E   LF EML +  + PD VT V+++ AC     +  G
Sbjct:  340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTA---GIIPNDPTMASVLKACSSL-ATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML-AEGMEPDDVTFVNIISACSHKGFVERG 543          

HSP 3 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 50/225 (22.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  178 IQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTV-VSVLHACGQSSDIVFGMEVH 849
            + H +  R     + +H ++I    +     A+ L+NFY+K   L +A  +F+ I  K + S+N+++  YS +   + +  +        +QD+ P+ +T+  + KA + L + S   ++ H+ V++      +++   L+  Y +   V     +F  M  R+  +W++M++GY+  G  EE   +F   L       D   V  +VL +   +  +  G ++H
Sbjct:   21 LTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSL-QSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244          

HSP 4 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  439 SSYSQDLKPDNFTITCVLKALT--GLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEE---CKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            S++  +L P   T+   LK LT     R+    + VH  ++R G  + +   N L+ FY++C  +A A ++F+ +  +D+VSWNS+I GYSQ G          LFREM    +L P+  T+  +  A         G + H
Sbjct:    4 STFQTELNPHTSTL---LKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDIL-PNAYTLAGIFKAESSLQSSTVGRQAH 141          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 69/217 (31.80%), Postives = 119/217 (54.84%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKS---NSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R+  Q+ A  I   +   +F+A KLINF ++S   +S+  ARH+F+ ++   I  +N+M   YS    +T+ L +FS         + PDN+T   +LKA   + +     +++H   ++ GLD ++++   LI  Y+ C+DV SAR +FD +    +V +N+MI GY++     E  +LFREM     L+P+ +T++SVL +C     +  G  +H
Sbjct:   43 RELMQIQAYAIKSHIEDVSFVA-KLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYS---RFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREM-QGKYLKPNEITLLSVLSSCALLGSLDLGKWIH 253          

HSP 2 Score: 92.8189 bits (229), Expect = 2.580e-18
Identity = 55/209 (26.32%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFG 837
            + +QLH   +   +  + ++   LIN Y++   +  AR VFD+I    +  YNAM+  Y+  +   + L LF  +   Y   LKP+  T+  VL +   L       K +H Y  +      + +   LI  +++C  +  A ++F+ M  +D  +W++MI  Y+  G  E+   +F E + S  ++PD +T + +L+AC  +  +  G
Sbjct:  147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY---LKPNEITLLSVLSSCA-LLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMF-ERMRSENVQPDEITFLGLLNACSHTGRVEEG 350          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.367e-24
Identity = 68/204 (33.33%), Postives = 110/204 (53.92%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLR-CGLDSSLFLV--NGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNS-PVLRPDGVTVVSVLHAC 810
            + KQ+H +++ H    D ++ + LI+ Y     L  AR VFD++  +S+ S+N+M+ A      Y   L+LF  +  S+    +PD +T+  VL A  GL   S      H+++LR C +D ++ ++  N LI  Y +C  +  A  +F GM  RD+ SWN+MI G++  G  EE    F  M++    +RP+ VT V +L AC
Sbjct:  169 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSF----EPDGYTMQSVLSACAGLGSLS-LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIAC 367          

HSP 2 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 73/216 (33.80%), Postives = 100/216 (46.30%), Query Frame = 1
Query:  211 QAKQLHA---RLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q KQLHA   R  +       FL  K++   S  + +  A  VFD I + S F +N ++ A + HD+                 +  PD  T   VLKA   +F  S   K+VH  +++ G    +++ NGLI  Y  C  +  AR +FD M  R +VSWNSMI    + G Y+    LFREM  S    PDG T+ SVL AC     +  G   H
Sbjct:   63 QLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACA-HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE-GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAH 274          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.154e-24
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 1
Query:  220 QLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGM 840
            Q+H ++       D+ L + L++ YS   +   A  VFD+I  +   S+N +   Y  +    D L LF  + +     +KPD  T    L+A   L     F K+VH ++   GL  +L L N L++ YSRC  +  A  +F GM  R++VSW ++I+G +  GF +E    F EML   +  P+  T+  +L AC  S  +  GM
Sbjct:  134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALD-FGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGI-SPEEQTLTGLLSACSHSGLVAEGM 338          

HSP 2 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 57/218 (26.15%), Postives = 101/218 (46.33%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKS---NSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKP--DNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP--VLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +Q+HA L+  S+  ++ +    ++  + S     +  +  VF +  + ++   N M+ A+S+     +  RLF SL  + S    P   +F + C +K+      D     ++H  +   G  S   L+  L+  YS C++   A  +FD +  RD VSWN + + Y +     +   LF +M N     ++PDGVT +  L AC     + FG +VH
Sbjct:   28 RQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKS-----GDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP192_ARATH6.339e-2532.84Pentatricopeptide repeat-containing protein At2g37... [more]
PP182_ARATH6.339e-2529.33Pentatricopeptide repeat-containing protein At2g33... [more]
PP265_ARATH8.280e-2532.00Pentatricopeptide repeat-containing protein At3g46... [more]
PP146_ARATH1.412e-2430.13Pentatricopeptide repeat-containing protein At2g03... [more]
PPR8_ARATH1.845e-2431.31Pentatricopeptide repeat-containing protein At1g03... [more]
PP405_ARATH3.146e-2429.82Pentatricopeptide repeat-containing protein At5g39... [more]
PP181_ARATH3.146e-2430.81Pentatricopeptide repeat-containing protein At2g33... [more]
PP145_ARATH4.109e-2431.80Pentatricopeptide repeat-containing protein At2g02... [more]
PPR85_ARATH5.367e-2433.33Pentatricopeptide repeat-containing protein At1g59... [more]
PP267_ARATH9.154e-2431.40Pentatricopeptide repeat-containing protein At3g47... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
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