FC918250

Overview
NameFC918250
Unique NameFC918250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.600e-20
Identity = 64/238 (26.89%), Postives = 112/238 (47.06%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLA----------------------------SSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            +++HA+++         +  K++  Y KS  L+ A+ +FD++  +   +   M+  YS      + L LF  +                                 +++  + FT  CVL A + L       + VHS+V    ++ S F+ N LI  YSRC D+  AR +F  M ++D++S+N+MI+G +  G   E    FR+M+N    RP+ VT+V++L+AC     +  G+EV
Sbjct:  143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGA-LELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRG-FRPNQVTLVALLNACSHGGLLDIGLEV 378          

HSP 2 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 51/176 (28.98%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  223 LHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREM 750
            +HA++I      D F+  +LI   S  +S+  A  VF  +++ +++ Y AM+  +       D + L+  +  +    + PDN+ IT VLKA      D +  +E+H+ VL+ G  SS  +   ++  Y +  ++ +A+ +FD M +RD V+   MI  YS+ GF +E   LF+++
Sbjct:   48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHN---SVLPDNYVITSVLKAC-----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDV 215          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.600e-20
Identity = 69/232 (29.74%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYS---KSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSS-LASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y  ++    + R   +  QLH  +I  SV  +    S+LI+F +   ++ +L  AR VF+ I   S++ +N+M+  YS        L  +   L   YS    PD FT   VLKA +GL RD +F   VH +V++ G + ++++   L+  Y  C +V     +F+ +   ++V+W S+I+G+     + +    FREM ++ V + +   +V +L ACG+  DIV G   H
Sbjct:    6 YKPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYS----PDYFTFPYVLKACSGL-RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGV-KANETIMVDLLVACGRCKDIVTGKWFH 231          

HSP 2 Score: 93.9745 bits (232), Expect = 1.158e-18
Identity = 50/181 (27.62%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  268 LASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            LA+ LI+ Y+K   L  AR++FD +  +++ S+N+++  YS +    + L +F  +       + PD  T   V++A + +   S+  + +H+YV + G      +V  L+  Y++  D  SA+  F+ +  +D ++W  +I G +  G   E  ++F+ M       PDG+T + VL+AC
Sbjct:  253 LATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL---GIAPDKVTFLSVIRA-SMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYAC 429          

HSP 3 Score: 89.3521 bits (220), Expect = 2.852e-17
Identity = 57/203 (28.08%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  265 FLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDS--------SLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            ++++ L++ Y     +     VF+ I   ++ ++ +++  +  ++ ++D +  F  + S+  +     N TI   L    G  +D    K  H ++   G D         ++ L   LI  Y++C D+ +AR LFDGM  R +VSWNS+I GYSQ G  EE   +F +ML+  +  PD VT +SV+ A         G  +H
Sbjct:  143 YVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKA----NETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSIH 340          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP415_ARATH (Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 66/225 (29.33%), Postives = 115/225 (51.11%), Query Frame = 1
Query:  193 DYRLPRQAKQLHARLI--FHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVH---DMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEV--HSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            D +  R  + LHA ++     V  D F+ + L+ FY+    L +AR +F++I    + ++N +L AY+     D   + L LF  +       ++P+  ++  ++K+   L     F + V  H YVL+  L  + F+   LI  YS+C  ++ AR +FD MS RD+  +N+MI G +  GF +E   L++ ++ S  L PD  T V  + AC  S  +  G+++
Sbjct:  125 DAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRM------QVRPNELSLVALIKSCANL---GEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLI-SQGLVPDSATFVVTISACSHSGLVDEGLQI 339          

HSP 2 Score: 82.8037 bits (203), Expect = 2.670e-15
Identity = 57/219 (26.03%), Postives = 112/219 (51.14%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDT---LRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRC--GLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQG---GFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            KQ+HA++I   ++   +  SKL++  S +  L  A  +  +I + S+F YN ++ +   +   T T     L+  + SS S  ++P+ FT   + KA     +  R  + +H++VL+    ++   F+   L+ FY+ C  +  AR+LF+ +   D+ +WN+++A Y+        EE   LF  M     +RP+ +++V+++ +C    + V G+  H
Sbjct:   26 KQIHAQIITIGLSHHTYPLSKLLHL-SSTVCLSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRM----QVRPNELSLVALIKSCANLGEFVRGVWAH 239          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 61/214 (28.50%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITS--KSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGME 843
            R  K +HARL    +  +  ++S L++ Y K N +  AR VFD +    +++ S+ +M+ AY+ +    + + LF S  ++ + D + + F +  V+ A + L R  ++ K  H  V R G +S+  +   L+  Y++C  ++ A  +F  +    ++S+ SMI   ++ G  E    LF EM+   +  P+ VT++ VLHAC  S  +  G+E
Sbjct:  148 RIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSD-RANQFMLASVISACSSLGR-LQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRI-NPNYVTLLGVLHACSHSGLVNEGLE 358          

HSP 2 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 59/213 (27.70%), Postives = 104/213 (48.83%), Query Frame = 1
Query:  223 LHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGM--SNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLHACGQSSDIVFGMEVH 849
            LH   +    A D F  + L+  Y K   +  AR +FD++   ++ S+ +++  Y+      + L +F  +     + + P+ +T   V KA + L  +SR  K +H+ +   GL  ++ + + L+  Y +C+DV +AR +FD M    R++VSW SMI  Y+Q     E   LFR   N+ +   R +   + SV+ AC     + +G   H
Sbjct:   51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHED--RPVPPNEYTFASVFKACSAL-AESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRS-FNAALTSDRANQFMLASVISACSSLGRLQWGKVAH 259          

HSP 3 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 34/111 (30.63%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  517 DSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            ++ F   +H+  L+ G  S  F VN L+  Y +  ++ +AR LFD M   ++VSW S+I+GY+  G  +   ++F++M     + P+  T  SV  AC   ++   G  +H
Sbjct:   44 NAAFTNLLHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIH 154          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 64/228 (28.07%), Postives = 116/228 (50.88%), Query Frame = 1
Query:  166 YGRLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y RL +  +   L  QA+++ + L+  S  P  FL ++ I  Y K   +  AR +F+++  +   S+NA++ A + + +  +  R+F  +       ++    +   VLK+  GL  D R  +++H  V++ G   ++ L   ++  Y +C  ++ AR +FD + N   VSWN ++  Y + GF +E   +F +ML   V RP   TV SV+ AC +S  +  G  +H
Sbjct:   64 YERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRD---GVRATETSFAGVLKSC-GLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNV-RPLNHTVSSVMLACSRSLALEVGKVIH 286          

HSP 2 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 55/187 (29.41%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  292 YSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSN-RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Y+ S    +AR +FD +  ++I S+NAML  Y VH    D    F +L     +++  DN T+  +L   +G+  D +  K+ H ++ R G D+++ + N L+  Y +C  + SA   F  MS  RD VSWN+++ G ++ G  E+  + F  M      +P   T+ ++L  C     +  G  +H
Sbjct:  339 YAMSGLTREARELFDLMPERNIVSWNAMLGGY-VHAHEWDEALDFLTLMRQEIENI--DNVTLVWILNVCSGI-SDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM--QVEAKPSKYTLATLLAGCANIPALNLGKAIH 519          

HSP 3 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 54/244 (22.13%), Postives = 106/244 (43.44%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREM------------------------------LNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R  +QLH  ++ +  + +  L + +++ Y K   +  AR VFD+I + S  S+N ++  Y       + + +F  +      +++P N T++ V+ A +         K +H+  ++  + +   +   +   Y +CD + SAR +FD   ++D+ SW S ++GY+  G   E + LF  M                              +   +   D VT+V +L+ C   SD+  G + H
Sbjct:  179 RLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLEL---NVRPLNHTVSSVMLACSRSLA-LEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAH 418          

HSP 4 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 50/213 (23.47%), Postives = 96/213 (45.07%), Query Frame = 1
Query:  208 RQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITS-KSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGME 843
            +  KQ H  +  H    +  +A+ L++ Y K  +L  A   F +++  +   S+NA+L   +        L  F  +      + KP  +T+  +L     +       K +H +++R G    + +   ++  YS+C     A  +F   + RD++ WNS+I G  + G  +E   LF  +L +  ++PD VT + +L AC +   +  G +
Sbjct:  412 QMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM----QVEAKPSKYTLATLLAGCANI-PALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFM-LLENEGVKPDHVTFLGILQACIREGHVELGFQ 618          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 64/211 (30.33%), Postives = 111/211 (52.61%), Query Frame = 1
Query:  241 FHSVAPDNF------LASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGM--SNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            FH     NF      + + L+  YS+  S+ ++  VF  +  + + S+N M+ A+  + +  + L L   +     Q  K D  T+T +L A + L R+    K+ H++++R G+     + + LI  YS+   +  ++ LF+G   + RD  +WNSMI+GY+Q G  E+   +FR+ML   + RP+ VTV S+L AC Q   +  G ++H
Sbjct:  340 FHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQK---QGFKIDYITVTALLSAASNL-RNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNI-RPNAVTVASILPACSQIGSVDLGKQLH 544          

HSP 2 Score: 89.3521 bits (220), Expect = 2.852e-17
Identity = 55/197 (27.92%), Postives = 97/197 (49.24%), Query Frame = 1
Query:  259 DNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            D F+ S  I+ Y++   +  +R VFD    ++I  +N M+  Y  +D   +++ LF  L +  S+++  D  T      A++ L +     ++ H +V +   +  + +VN L+  YSRC  V  +  +F  M  RD+VSWN+MI+ + Q G  +E   L  EM      + D +TV ++L A     +   G + H
Sbjct:  250 DLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELF--LEAIGSKEIVSDEVTYLLAASAVSAL-QQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEM-QKQGFKIDYITVTALLSAASNLRNKEIGKQTH 442          

HSP 3 Score: 87.8113 bits (216), Expect = 8.299e-17
Identity = 61/226 (26.99%), Postives = 114/226 (50.44%), Query Frame = 1
Query:  175 LIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDK--ITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            L+   ++ R     KQ HA LI   +  +  + S LI+ YSKS  +  ++ +F+      +   ++N+M+  Y+ +     T  +F  +     Q+++P+  T+  +L A + +       K++H + +R  LD ++F+ + L+  YS+   +  A  +F     R+ V++ +MI GY Q G  E   +LF  M  S + +PD +T V+VL AC  S  I  G+++
Sbjct:  425 LLSAASNLRNKEIGKQTHAFLIRQGIQFEG-MNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLE---QNIRPNAVTVASILPACSQI-GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI-KPDAITFVAVLSACSYSGLIDEGLKI 644          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 64/199 (32.16%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLD-SSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHAC 810
            +++H  +I       + + + ++  Y+ S+SL  AR +FD+++ + + S++ ++ +Y         L+LF  +   +    +PD  T+T VLKA T +  D    + VH + +R G D + +F+ N LI  YS+  DV SA  +FD  + R+IVSWNS++AG+     Y+E   +F  M+   V   D VTVVS+L  C
Sbjct:  166 EKIHGYVIRSGFCGISSVQNSILCMYADSDSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMV--HEAKTEPDCVTVTSVLKACT-VMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAV-EVDEVTVVSLLRVC 359          

HSP 2 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 64/213 (30.05%), Postives = 99/213 (46.48%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            Q + + A L+         + + + +FY K   L      FD + S+   S+N ++     +    + L  FS L        +P+  T+  V+ A   L+ D    +++H YV+R G      + N ++  Y+  D + SAR LFD MS RD++SW+ +I  Y Q         LF+EM++     PD VTV SVL AC    DI  G  VH
Sbjct:   65 QGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRV---WGFEPNTSTLVLVIHACRSLWFDG---EKIHGYVIRSGFCGISSVQNSILCMYADSDSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVH 270          

HSP 3 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 50/218 (22.94%), Postives = 99/218 (45.41%), Query Frame = 1
Query:  196 YRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLD-SSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEV 846
            +  P   K +H  +I      +    S LI+ Y+  + +  A  V D +T K + S + M+   +      + + +F  +  +      P+  T+  +L A + +  D R +K  H   +R  L  + + +   ++  Y++C  +  AR  FD ++ ++I+SW  +I+ Y+  G  ++  ALF EM       P+ VT ++ L AC     +  G+ +
Sbjct:  362 FEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDT------PNAITVISLLNACS-VSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEM-KQKGYTPNAVTYLAALSACNHGGLVKKGLMI 571          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 62/223 (27.80%), Postives = 110/223 (49.33%), Query Frame = 1
Query:  172 RLIQHFTDYRLPRQAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGM 840
            RL  +  D  L   A Q+H+R++      +      LIN Y K   ++ A+ VFD   +++IF    ++ AY     + + L LFS + +   +++ P+ +T   +L ++  L    +    +H  VL+ G  + + + N L+  Y++   +  AR  F GM+ RDIV+WN+MI+G S  G   E    F  M+ +  + P+ +T + VL AC     +  G+
Sbjct:  245 RLFSNLRDLNL---ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDT---KEVPPNEYTFAILLNSIAELSLLKQ-GDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEI-PNRITFIGVLQACSHIGFVEQGL 459          

HSP 2 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 60/217 (27.65%), Postives = 105/217 (48.39%), Query Frame = 1
Query:  208 RQAKQLHARLIF---HSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            R  + +HA LI     S A D +  + LIN Y K    ++AR +FD +  +++ S+ AM+  Y       + L+LF S+   +S + +P+ F  T V K+ +   R     K+ H   L+ GL S  F+ N L+  YS C     A  + D +   D+  ++S ++GY + G ++E   + R+  N   +  + +T +S L       D+   ++VH
Sbjct:   48 RIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSM--FFSGESRPNEFVATVVFKSCSNSGRIEE-GKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVW-NNLTYLSSLRLFSNLRDLNLALQVH 260          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 60/212 (28.30%), Postives = 118/212 (55.66%), Query Frame = 1
Query:  214 AKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +KQ+H   I  +   D+F+++ LI+ YS++  + +A  +F++  +  + ++NAM+  Y+       TL+LF+ +   + Q  + D+FT+  V K    LF  ++  K+VH+Y ++ G D  L++ +G++  Y +C D+++A+  FD +   D V+W +MI+G  + G  E    +F +M    VL PD  T+ ++  A    + +  G ++H
Sbjct:  436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALM---HKQGERSDDFTLATVFKTCGFLFAINQ-GKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL-PDEFTIATLAKASSCLTALEQGRQIH 641          

HSP 2 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  217 KQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYS-VHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRF---AKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSD 825
            K  HAR++     P+ FL + LI+ YSK  SL  AR VFDK+  + + S+N++L AY+   +   + ++    L     QD+    +T    L  +  L   S +   ++  H Y  + GLD   F+   L+  Y +   V   + LF+ M  RD+V WN M+  Y + GF EE   L     +S  L P+ +T+  +    G  SD
Sbjct:   59 KCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVV---YTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL-SSAFHSSGLNPNEITLRLLARISGDDSD 261          

HSP 3 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 61/194 (31.44%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  268 LASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGMEVH 849
            +++ LIN Y K      AR VFD ++ + + S+N+++   + + +  + + LF  L       LKPD +T+T VLKA + L      +K+VH + ++    S  F+   LI  YSR   +  A  LF+   N D+V+WN+M+AGY+Q     +   LF  +++    R D  T+ +V   CG    I  G +VH
Sbjct:  352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC---GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540          

HSP 4 Score: 84.3445 bits (207), Expect = 9.175e-16
Identity = 57/206 (27.67%), Postives = 98/206 (47.57%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKA---LTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQS 819
            Q KQ+HA  I      D +++S +++ Y K   +  A+  FD I      ++  M+     +        +FS +       + PD FTI  + KA   LT L +     +++H+  L+    +  F+   L+  Y++C  +  A  LF  +   +I +WN+M+ G +Q G  +E   LF++M  S  ++PD VT + VL AC  S
Sbjct:  535 QGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR---LMGVLPDEFTIATLAKASSCLTALEQ----GRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM-KSLGIKPDKVTFIGVLSACSHS 732          

HSP 5 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  334 DKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDS-RFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHA 807
            D  +   I   N  L  Y     Y+  L+ F+ +  S   D++ D   +T +L   T +  DS    ++VH   L+ GLD  L + N LI  Y +      AR +FD MS RD++SWNS+IAG +Q G   E   LF ++L    L+PD  T+ SVL A
Sbjct:  273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVES---DVECDQ--VTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG-LKPDQYTMTSVLKA 425          
BLAST of FC918250 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 59/180 (32.78%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  301 SNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLHACGQSSDIVFGM 840
            ++ L  A  VF+++  +++ S+ AM+ AY  +    +  +LF  +      D+KP+ FTI  +L+A T L   S   + VH Y  + G     FL   LI  YS+C  +  AR +FD M  + + +WNSMI      G  EE  +LF EM     + PD +T V VL AC  + ++  G+
Sbjct:  198 NSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVD---DVKPNEFTIVNLLQASTQLGSLS-MGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGL 373          

HSP 2 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  211 QAKQLHARLIFHSVAPDNFLASKLINFYSKSNSLIQARHVFDKITSKSIFSYNAMLIAYSVHDMYTDTLRLFSSLASSYSQDLKPDNFTITCVLKALTGLFRDSRFAKEVHSYVLRCGLDSSLFLVNGLITFYSRCDDVASARALFDGMSNRDIVSWNSMIAGYSQGGFYEECKALFREM 750
            Q KQ+H ++I H++  D  L  +LI+  S       A  VF+++ S S F++N M+ + SV+    + L LF  +  S+      D FT   V+KA        R   +VH   ++ G  + +F  N L+  Y +C    S R +FD M  R IVSW +M+ G       +  + +F +M
Sbjct:   35 QLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQF--DKFTFPFVIKACLAS-SSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQM 211          
The following BLAST results are available for this feature:
BLAST of FC918250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PP435_ARATH3.600e-2026.89Putative pentatricopeptide repeat-containing prote... [more]
PP214_ARATH3.600e-2029.74Putative pentatricopeptide repeat-containing prote... [more]
PP415_ARATH4.701e-2029.33Pentatricopeptide repeat-containing protein At5g43... [more]
PP313_ARATH4.701e-2028.50Pentatricopeptide repeat-containing protein At4g15... [more]
PP256_ARATH4.701e-2028.07Pentatricopeptide repeat-containing protein At3g26... [more]
PP246_ARATH4.701e-2030.33Pentatricopeptide repeat-containing protein At3g22... [more]
PP159_ARATH4.701e-2032.16Pentatricopeptide repeat-containing protein At2g17... [more]
PP406_ARATH6.140e-2027.80Pentatricopeptide repeat-containing protein At5g39... [more]
PP347_ARATH6.140e-2028.30Pentatricopeptide repeat-containing protein At4g33... [more]
PP257_ARATH6.140e-2032.78Pentatricopeptide repeat-containing protein At3g26... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918250 ID=FC918250; Name=FC918250; organism=Citrus clementina; type=EST; length=849bp
CTTATTGTTATAAGAAAGAAACACCAAGCAAATTAGTGAATTCGGTTTGG
CAGCCAGCAAACCAAATGAATGACGCACGCGAACTCACTATCGTTAAACA
TTCAAAATCTGCGCGCCAACAGTGGCCAAATTCAGCGAGCTCTTCAGACT
CTCGACTGTGGCGCTTACGGCCGACTCATCCAACATTTCACCGACTACCG
CCTTCCTCGCCAAGCCAAGCAACTCCACGCGCGCCTCATCTTCCATTCCG
TTGCACCCGACAACTTCCTCGCATCGAAACTCATCAATTTCTACTCGAAA
TCTAACAGTCTCATTCAAGCGCGACACGTGTTCGATAAAATTACAAGCAA
AAGCATCTTCTCATACAACGCCATGCTTATCGCGTACTCTGTTCACGACA
TGTATACTGATACGTTAAGGTTGTTTTCGTCTTTGGCGTCGTCTTATTCA
CAGGATTTGAAGCCTGATAACTTTACGATTACTTGTGTTTTGAAGGCATT
GACTGGTTTGTTCCGCGACTCGAGATTCGCTAAGGAGGTTCATTCCTATG
TTTTGCGATGTGGGCTTGATTCAAGTTTGTTTCTTGTTAATGGTTTGATA
ACATTTTATTCAAGATGCGATGATGTTGCTTCAGCGAGGGCGTTGTTTGA
TGGAATGTCGAATAGAGATATTGTGTCGTGGAATTCGATGATTGCTGGGT
ATTCCCAAGGAGGGTTTTACGAAGAGTGTAAAGCATTGTTTAGAGAGATG
TTAAACTCACCGGTATTGAGACCGGATGGGGTGACAGTCGTTAGTGTTTT
GCACGCGTGTGGGCAATCTAGTGATATAGTTTTCGGAATGGAAGTGCAT
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