FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14089 contig Ccv1_Contig14089:1..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 148
            +DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  365 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            ID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  362 IDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            +D +SG+  E+ P ++K GDA +V + PT+PM +E  S+ P LGRFA+RDM  T+A G+  SV +K
Sbjct:  356 LDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 28/66 (42.42%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            I+  +G   E+ PKFLK GD+ ++K+ P +P  +ETF ++P +GRFA+RDM  T+A G++K + ++
Sbjct:  368 INPATGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEITEE 433          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            +D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S+++
Sbjct:  364 LDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 428          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            +D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S+++
Sbjct:  362 LDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 426          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 178
            +D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  347 LDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            ++  +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F   P LGRFA+RDM +TVA+G+ + V  K
Sbjct:  362 VNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   14 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 178
            +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  351 TGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A_ANIIF1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE1.463e-1157.14Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_PYRAB1.911e-1146.15Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_METBU1.911e-1146.97Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_CENSY2.495e-1142.42Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_PYRWO5.559e-1143.08Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU5.559e-1143.08Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METS35.559e-1152.54Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_NANEQ7.260e-1143.94Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_METTH9.482e-1154.55Elongation factor 1-alpha OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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