FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14089 contig Ccv1_Contig14089:1..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.142e-22
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            +DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D
Sbjct:  379 VDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.104e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 202
            IDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  368 IDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.000e-22
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            IDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  377 IDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.142e-22
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            IDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  377 IDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.194e-21
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            +DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  379 VDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 208
            +D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIKSV KK+ T
Sbjct:  363 MDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            IDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  381 IDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            IDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  367 IDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            +DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  KD TG
Sbjct:  328 VDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.016e-20
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 DRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 211
            DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  380 DRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A4_OSCTI3.142e-2273.13Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_TETPY4.104e-2271.64Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_CRYNE7.000e-2268.57Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A3_RHIRA9.142e-2271.43Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_DROME1.194e-2165.71Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_CRYPV2.660e-2169.57Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_HYDAT1.011e-2072.31Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_EUGGR1.011e-2072.86Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_RHYAM2.941e-2067.14Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_APIME5.016e-2068.12Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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