FC919305

Overview
NameFC919305
Unique NameFC919305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14089 contig Ccv1_Contig14089:1..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.848e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 199
            ID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+  V+ K
Sbjct:  365 IDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+  V+
Sbjct:  366 LDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.082e-14
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I  V+
Sbjct:  365 LDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++  V+
Sbjct:  367 LDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  374 LDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  374 LDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            +D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  374 LDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.163e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            ID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  369 IDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.163e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 193
            ID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  367 IDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of FC919305 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 2
Query:    2 IDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 196
            +D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P LGRFA+RDM QTVA G++ S++K
Sbjct:  362 LDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of FC919305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
EF1A_SULTO2.848e-1557.58Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_STAMF6.346e-1553.13Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_SULSO1.082e-1454.69Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_HYPBU2.411e-1451.56Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_PYRCJ3.149e-1453.13Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR3.149e-1453.13Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRAE3.149e-1453.13Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_IGNH49.163e-1453.13Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_DESMO9.163e-1453.13Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_THESM1.197e-1350.77Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionC06055A07T7 PCR Citrus clementina cDNA clone C06055A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919305 ID=FC919305; Name=FC919305; organism=Citrus clementina; type=EST; length=567bp
GATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGA
AGAATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTT
GTTGAGACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGA
CATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGG
ATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAA
ATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTT
TATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCT
ATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGC
TTAACTGGCTGTGGTGGGGGTTCGGATTTTTATATTCTGAATTTGGTTAA
TAGCACTAAATTGAGTTGTGAAGTTTATAGACCAGCTGCTGGATGTCAAA
GTTGGTGGTTTTAATACATTTGGAAGCTCATTTTAAGCTCTTTGATTAAA
AAAAAAAAAAAAAAAAA
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