FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 7.652e-32
Identity = 73/142 (51.41%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEY+VESTGVFT               VIISAPS DAPMFV GVN   YKP++
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ANVVAVNDPFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDM 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.705e-31
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 509
            V + +NGFGRIGRLV R+ + R D+ LVA+NDPFI+TDY  YMFKYDS HG++   E+    D  +L G+K V VF  ++P  +PW + G +  ++STG+F                V+I+APS  APM+V+GVNE  Y P+
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRF-DGEVSHDKDHIILNGKK-VAVFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPSGSAPMYVMGVNEETYTPD 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.705e-31
Identity = 68/142 (47.89%), Postives = 88/142 (61.97%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 509
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+ DY  YMFKYDS HG++        D+ +L+   K V VF  R+P  +PW E   +  ++STGVF                V+I+APS  APMFVVGVNE +Y  E
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGE--VSHDENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYNGE 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.226e-31
Identity = 73/142 (51.41%), Postives = 88/142 (61.97%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               VIISAPS DAPMFV GVN   Y P++
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDM 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.908e-31
Identity = 73/142 (51.41%), Postives = 91/142 (64.08%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K   +  +    ++ G+K +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   Y P++
Sbjct:    3 KIGINGFGRIGRLVLRAAVDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKG-TVSAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPDM 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.798e-31
Identity = 68/142 (47.89%), Postives = 88/142 (61.97%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 509
            VK+ ING G+IGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG  K+      +  TL+   K + VF  R+P ++PW E G +  ++STGVF                V+I+APS  APMFV+GVNE +Y  E
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRANVEVVAINDPFITVDYAAYMFKYDSTHG--KYAGDVQYEGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYAGE 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.798e-31
Identity = 69/156 (44.23%), Postives = 100/156 (64.10%), Query Frame = 3
Query:   39 HSFTAQFHLSRIMGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 506
            H  T    +  +  ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                V+ISAPS DAPMFV+GVNE++Y P
Sbjct:   61 HPATPPPKMVSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 3.798e-31
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG++        DDK ++   K +  +  R+P  +PW  +  +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGE--VSHDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.798e-31
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            V++ INGFGRIGR+V R+ ++RD +++VA+NDPFIT DY  YMFKYDS HG++        DDK L+   K +  +  R+P ++PW +   + V+E+TGVFT               V+I+ PS  APMFV GVN+ +Y  ++
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGE--VTHDDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAKKVVITGPSATAPMFVKGVNDDKYTSDV 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 4.960e-31
Identity = 66/143 (46.15%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            V++ INGFGRIGRLV R+ LQR +VE+VA+NDPFI+ DY  YMFKYDS HG++        DDK ++     +  F  R+P  +PWA    +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGE--VSHDDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P2_DROME7.652e-3251.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_ZYGRO1.705e-3145.77Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P2_KLULA1.705e-3147.89Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_DROME2.226e-3151.41Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_DROHY2.908e-3151.41Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_ASHGO3.798e-3147.89Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PT_HUMAN3.798e-3144.23Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_YEAST3.798e-3145.45Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P1_CANGA3.798e-3143.36Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P2_YEAST4.960e-3146.15Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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