FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.675e-27
Identity = 70/144 (48.61%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVAR-VILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            +KIGINGFGRIGR+V R  I    D+E+VA+ND  +  DY+ YM KYDSVHG++   E+ V D  TL+   K + +  V++P E+ W E GA+ VVESTG+F                VI+SAPSK D PMFV GVN   YK E
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKDIEVVAIND-LLEPDYLAYMLKYDSVHGRF-DGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYKGE 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.678e-26
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKPE 509
            +KIGINGFGRIGRLVAR+ +    V LV +ND  +    + Y+FKYDS HG +      V  ++ ++  ++ +  F  RNP ++PW + GA+YVVESTG+FT               VIISAPSKD    P FVVGVN   Y  +
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGG--TVVAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNAD 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.195e-26
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYK 503
            M  V  GINGFGRIGRLVAR++++  + +L+ VN    T DYM Y FKYDS+HG+++  ++ V  D  ++ G++ +T    R+P++I WA+TG EY+ ESTGVF                VI SAP+KD  + VV GVN  +YK
Sbjct:   46 MQAVPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQ-GDVVVDGDDLVIDGQRVITT-RARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYK 187          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.384e-25
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  156 VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 500
            V+++AV+DPFI   YM YMFKYDSVHG++K   +++KD K ++ G  P+TVF  R+P  I W   GA+YVVES+GVFT               VIISAPS DAPMFVVGVN   Y
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHGRFKG-TVEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAY 118          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 3.114e-25
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 506
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLRS-QVEAKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.114e-25
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 506
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLRS-QVETKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.312e-25
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            +K+GINGFGRIGR++ R+  +R D+E++A+ND  +  +Y+ YM KYDS HG +K H    KD+  ++   K + V  +++PE++ W +   + V+ESTG+F                V+++ PSK D PMFV G N H+Y+ E
Sbjct:    3 IKVGINGFGRIGRVLFRLAQKRSDIEIIAIND-LLAPEYIAYMLKYDSTHGVFKKHITFDKDN--IIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSKKVVVTGPSKDDIPMFVRGANFHKYQGE 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.636e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 500
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.497e-24
Identity = 62/153 (40.52%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 506
            +K+GINGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH     K       DD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP S  A  FV+GVN + Y P
Sbjct:    3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNP 155          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.497e-24
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            +++GINGFGRIGR+V R   +R+D+E+V +ND  +  DYM YM KYDS HG+++   ++V+    ++ G+K + V   R+P  + W E   + VVESTG+F                V+I+ PSK D PMFV+GVN   YK E
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFE-GAVEVQGGALVVNGKK-IRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGPSKDDTPMFVMGVNHTTYKGE 142          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_RALSO5.675e-2748.61Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P1_SYNY33.678e-2644.14Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3PA_GUITH8.195e-2644.44Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_LACDT2.384e-2553.04Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ANAVT3.114e-2542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP3.114e-2542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BUCAI5.312e-2539.16Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_ESCF32.636e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3PG_TRYBB4.497e-2440.52Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PC_TRYBB4.497e-2441.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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