FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            +K+ INGFGRIGRLV R IL+R+  VE++A+ND  +  D +TY+FK+DS HG++   +++ + D  L+ G++ +     RN + +PW + G + V+E TG+FT               V+ISAP K D P FV+GVN   + PE
Sbjct:    1 MKVVINGFGRIGRLVLRQILKRNSSVEVLAIND-LVPGDALTYLFKFDSTHGRFP-EDVRCEADH-LIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKGDIPTFVMGVNHKTFNPE 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYK 503
            VK+GINGFGRIGR+V R    R D+E+V +ND  +  +YM Y  KYDS HG++      +K    L+   K + V   R+P  + W E G E VVESTG+F                V+++ P K D PMFV+GVN   YK
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVIKG--ALVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKDDTPMFVMGVNHTTYK 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRD----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 506
            M  +K+GINGFGRIGR+V + I  +     ++++VAV D     +Y  Y  K+D+VHG+ K+    VK        D  ++ G +   V   RNP ++PW + G +YV+ESTG+FT               V+ISAP S  A   V+GVN+HEY P
Sbjct:    1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSP 156          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 500
            +KIGINGFGRIGR++ R+   R ++E++A+ND  I   Y+ YM KYDS+HG + + ++ +K++ TL    K + +   ++P+ + W +   + V+ESTG+F                VII++P KD  PMFV GVN +EY
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLRSNIEILAIND-LINVQYIAYMLKYDSIHGNF-NGKIVIKNE-TLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITSPPKDNTPMFVRGVNFNEY 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKP 506
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND  +  D +TY+FKYDS HG +         D  L+ GE+ V     ++ +++PW +   + VVESTG+F                V+I+AP+K D P FV+GVN  ++ P
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNSPIEVVAIND-LVAGDLLTYLFKYDSTHGSFAPQ--ATFSDGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDP 140          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 500
            +K+GINGFGRIGR+V R  ++   +D+++V +ND  +  +Y+ YM KYDSVHG+++  E+ V+D   ++ G K + +    +P  + W E  A+ VVESTG F                VI+SAPSKD+ PMFV GVN   Y
Sbjct:    2 IKVGINGFGRIGRMVFRAAVKNFGNDIQIVGIND-LLDAEYLAYMLKYDSVHGRFE-GEVAVEDGALIVNGNK-IRLTAEMDPANLKWNEVDADVVVESTGFFLTDETARKHIQAGAKKVIMSAPSKDSTPMFVYGVNHTSY 140          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.209e-22
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKP 506
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND  ++ D +TY+FKYDS HG +         D  L+ GE+ +     ++ +++PW +   + VVESTG+F                V+I+AP+K D P FV+GVN  ++ P
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNAPIEVVAIND-LVSGDLLTYLFKYDSTHGSFASQ--ATFSDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKDDAAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQKFDP 140          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.179e-22
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 500
            VKIGINGFGRIGR V R  L+ D+VE+VA+ND     + + ++ KYDSVHG  K     V D   L+   K + +   R+P ++ W + G E VVESTG FT               VIISAP+ D  +  V+GVNE +Y
Sbjct:    3 VKIGINGFGRIGRNVFRAALKNDNVEVVAIND-LTDANMLAHLLKYDSVHG--KLDAEVVVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPASDEDITIVMGVNEDKY 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRD----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKH-------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 506
            M  +K+GINGFGRIGR+V + + + +    ++++VAV D     +Y  Y  K+D+VHG+ K+            K D  ++ G + + V   RNP ++PW + G +YV+ESTG+FT               V+ISAP S  A   V+GVN+HEY P
Sbjct:    1 MAPIKVGINGFGRIGRMVFQSMCEDNVLGTELDVVAVVDMSTDAEYFAYQMKFDTVHGRPKYTVEVAKSSPSAKKPDVLVVNGHRILCVKADRNPADLPWGKLGVDYVIESTGLFTDKAKAEGHVKGGAKKVVISAPASGGAKTIVMGVNQHEYNP 156          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 102.449 bits (254), Expect = 1.225e-21
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 509
            VK+GINGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V  +  ++ G K + V   R+PE + W E G + VVESTG FT               VIISAP+K+  +  V+GVN+ +Y P+
Sbjct:    3 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGR-LDAEVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPK 142          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_CHLPN4.972e-2340.97Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_LEIME8.480e-2341.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PG_LEIME1.108e-2238.46Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BUCBP2.467e-2239.29Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_CHLTR3.223e-2240.56Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_BACFR3.223e-2241.55Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P_CHLMU4.209e-2239.86Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_BACME7.179e-2243.57Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PG_CRIFA9.376e-2237.18Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BACST1.225e-2142.66Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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