FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.599e-21
Identity = 62/140 (44.29%), Postives = 81/140 (57.86%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 500
            VK+GINGFGRIGR V R  ++  D+E+VAVND     D + ++ KYDSVHG+    E+ V D  ++    K + V   RNPE + W E G + VVESTG FT               VIISAP+K   + VV GVN+ +Y
Sbjct:    3 VKVGINGFGRIGRNVFRAAVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGR-LDAEVVVNDGVSV--NGKEIIVKAERNPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKVENITVVMGVNQDKY 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 3
Query:   96 INGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 500
            INGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:    1 INGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLVVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFDAY 133          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-21
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVN 488
            +++ INGFGRIGRLV R +L + ++E+VAVND     D + ++ KYDS HG++K  +  V  D TL+  +K V VF  ++P  +PWAE   + VVESTG F                VIISAP+K   +  V  N
Sbjct:    8 IRVAINGFGRIGRLVFRALLSQKNIEIVAVND-LTHPDTLAHLLKYDSAHGEFK--KKVVAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAKRVIISAPAKQKTIKTVVYN 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKP 506
            +++GINGFGRIGR   R +L++  D+E+VAVND    T    ++ KYD++ G+ K      +D  T+    K + V   RNP +IPW E G + V+ESTG+FT               V+ISAP+KD  +  V+GVN+ +Y P
Sbjct:    3 IRVGINGFGRIGRNYFRALLEQGADIEIVAVND-LGDTATTAHLLKYDTILGRLKAEVSHTED--TITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAKDEDITIVMGVNQDKYDP 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 509
            ++ INGFGRIGRLV R+I +R   D+E+VA+ND    T  + ++ KYDSVH   K    KV+  + +L+   K + VF   +P ++PW + G ++V+ESTGVF                VII+AP+K   +  V+G NE + KPE
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVH---KKFPGKVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPE 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 58/150 (38.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYKPEL 512
            + K+K+ INGFGRIGR   R    R D  +E++ VND     +  +++ KYDS+ G +K  E+K+ +++T+    KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +V+GVNE +Y  E+
Sbjct:   83 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKN-ASHLLKYDSMLGTFKA-EVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIGVNEQDYGHEV 230          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEY 500
            + K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G +K  ++K+ D++T     KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +VVGVNE +Y
Sbjct:   82 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKS-ATHLLKYDSILGTFKA-DVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDY 225          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 61/141 (43.26%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 500
            KIGINGFGRIGR V R  L   +VE+VA+ND    TD  T  ++ KYD+VHG   + E+   ++  ++ G K + V   R+P ++PW++ G E VVESTG FT               VIISAP+ D  + VV GVN  +Y
Sbjct:    3 KIGINGFGRIGRNVFRAALNNSEVEVVAIND---LTDAKTLAHLLKYDTVHGTL-NAEVSANENSIVVNG-KEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISAPASDEDITVVMGVNHEQY 138          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAP-MFVVGVNEHEY 500
            +++ INGFGRIGR  AR  L R++  +ELVAVND   T+D  T  ++ KYDS+ G+ K+ ++   DD ++    K +     RNPE +PW E   + ++ESTGVFT               V+I+AP K+    FV+GVN H+Y
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVND---TSDPRTNAHLLKYDSMLGKLKNVDITA-DDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKNEDGTFVIGVNHHDY 141          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 59/140 (42.14%), Postives = 80/140 (57.14%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 500
            VK+GINGFGRIGR V R  L   +VE+VAVND     + + ++ +YDSVHG+    E+ V D   L+   K + V   R+P ++ W + G E VVESTG FT               VIISAP+ +  +  V+GVNE +Y
Sbjct:    3 VKVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHGK-LDAEVSV-DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANEEDITIVMGVNEDKY 139          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_BACCO1.599e-2144.29Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_KLEPN2.089e-2141.18Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MYCPN2.728e-2141.48Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_STRCO6.077e-2139.86Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_THEMA2.309e-2040.00Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3PB_PEA2.309e-2038.67Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.016e-2040.41Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P1_BACCE3.016e-2043.26Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P2_ANAVT6.719e-2040.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_BACSU6.719e-2042.14Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
back to top