FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS-KDAPMFVVGVNEHE 497
            KI INGFGRIGRL  R IL+   +E+VA+ND       + ++FKYDS  G++ + E++VK+   ++ G K V VF   +PE++PW + G + V+E TG FT               V+ISAP+  D    V  VN  +
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNED 137          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.390e-17
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYKPE 509
            V+IGINGFGRIGR V R    R  ++E+VAVND       M ++  YDS+ G++   E    +   +  G++ + V   R+P  +PW + G + V+ESTG+FT               VII+AP+      VV GVN+ +Y PE
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARSSELEIVAVND-LGDVPTMAHLLAYDSILGRFP--EEVTAEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPASGEDFTVVLGVNDGDYDPE 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.076e-17
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS--KDAPMFVVGVNEHEYKPE 509
            K+++ INGFGRIGR   R    R +  +++VA+ND        +++ KYDS  G +   ++K+ DD  +    K + +   R+P ++PW E   + V+E TGVF                V+I+AP+  KD P FVVGVNE +YK E
Sbjct:   37 KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAA-DVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVVGVNEGDYKHE 181          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 500
            V++GINGFGRIGR   R +L +      D+E+VAVND       + ++ K+DS+ G+  + ++ ++ + T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  + VV GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVND-ITDNSTLAHLLKFDSILGRLPY-DVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITVVLGVNDDKY 146          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 503
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 125          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 509
            KV++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + ++ L+ G  P++      P+++PW + G + V+E +G F                VI++AP K+  +  V+GVN++ Y+PE
Sbjct:    2 KVRVGINGFGRMGRLALRAAWDWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLIDG-TPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            K+K+ INGFGRIGR   R    R D   ++++A+ND        +++ KYDS  G +   ++K   D  +    K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN  +Y P+
Sbjct:   67 KLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPD 211          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 500
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 124          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 500
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 500
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_CLOAB1.401e-1739.13Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_STRAE2.390e-1737.50Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_CHLRE4.076e-1736.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_MYCAV5.324e-1736.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_CITFR5.324e-1737.50Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ANASP5.324e-1732.64Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PA_MAIZE9.081e-1736.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ESCFE9.081e-1737.80Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P_MYCTU1.549e-1636.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.549e-1636.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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