FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVN 488
            +++ INGFGRIGR V R I++  R D+E+VA+ND     +   ++ ++DSVHG++         D  +  G  P+ V  +RNP E+PWA  G +  +E TG+FT               V++SAP   A   +V GVN
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAIND-LGQVETNAHLLRFDSVHGRFP--AKVTSGDDWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGADRTIVYGVN 135          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVN 488
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP  KD    +V GVN
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISAPGGKDVDATIVYGVN 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   72 IMGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 509
            +  K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVN   Y P+
Sbjct:   54 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPD 200          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYKPE 509
            ++ INGFGRIGR   R  L R D  +E+V +ND   T+D  T  ++ +YDS+ G  K       D+ ++    K +     RNP  +PWAE   + V+E+TGVF                V+I+AP K  +   +VVGVN HEYK E
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGIND---TSDPRTNAHLLRYDSMLG--KLDADISADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHE 144          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVN 488
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP  KD    +V GVN
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDLEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISAPGGKDVDATIVYGVN 139          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNE 491
            K+GINGFGRIGRLV R +L+ + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+ +    V  VN+
Sbjct:    3 KVGINGFGRIGRLVLRRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYKVND 135          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPEL 512
            +I INGFGRIGR V R +L+RD D+++VAVND       +  +  YD+  G+     + V+ +  ++ G + +TV   R P  +PWAE G + V+E+TG FT               V++SAP+  A +    GVN   Y P+L
Sbjct:    3 RIAINGFGRIGRNVLRALLERDSDLDVVAVND-LTEPATLARLLAYDTTSGRLGR-PVTVEGNVLVVDGRR-ITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVLVSAPADGADITLAFGVNTDAYDPDL 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 55/146 (37.67%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM--FVVGVNEHEY 500
            KV++ INGFGRIGR   R    R D  +++V +ND   T+   T  ++ KYDS+ G +    +  +D  T+    K + V   RNP E+PW E   + VVE+TGVF                V+I+AP K   +  FVVGVN+H Y
Sbjct:   80 KVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCIND---TSGVKTASHLLKYDSILGTFDSDVVAGEDSITV--DGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLY 220          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 500
            K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   ++K   +  +    K + V   RNP  +PW E G + V+E TGVF                VII+AP K D P +VVGVN   Y
Sbjct:   61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAY 201          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 500
            +V R   +R D+E+V +ND  +  +YM YM KYDS HG++    ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:    1 IVFRAAQKRSDIEIVGIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETY 124          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P2_RHOSH1.311e-1536.23Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3PC_RALEH2.237e-1538.57Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PA_TOBAC2.921e-1535.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY32.921e-1537.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PP_RALEH3.815e-1538.57Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3P3_ECO573.815e-1534.56Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P_STRAU4.983e-1536.11Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_GRAVE6.508e-1537.67Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_ARATH6.508e-1536.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_ENTAE8.500e-1535.43Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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