FC920187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12 Identity = 53/186 (28.49%), Postives = 94/186 (50.54%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S+ + R+L+ G GFIG+HL ++L+ +++ E+ +D S D + +++G PRF + D++ E + + D I L A+PI Y NP++ + + L ++ R RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++G+ + R Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFR 495
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12 Identity = 53/186 (28.49%), Postives = 94/186 (50.54%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S+ + R+L+ G GFIG+HL ++L+ +++ E+ +D S D + +++G PRF + D++ E + + D I L A+PI Y NP++ + + L ++ R RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++G+ + R Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFR 496
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 164 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGAR-ILLTSTSKVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVADTLM 628 M ILV GGAG+IGSH+VD+L+E + EV+VVD+ TG + + HP + + D+ + + +VD + H A + P+K N G + +L + G + I+ +ST+ YG P DE P + Y E K + +T+M Sbjct: 1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIP-----DEIPIKETTPQRPINPYGESKLMMETIM 154
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489 The following BLAST results are available for this feature:
BLAST of FC920187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920187 ID=FC920187; Name=FC920187; organism=Citrus clementina; type=EST; length=678bpback to top |