FC920187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11 Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2 Query: 143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y ++ G++ + R Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11 Identity = 51/178 (28.65%), Postives = 93/178 (52.25%), Query Frame = 2 Query: 167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 R+L+ G GFIG+HL ++L+ +++ ++ +D GS D + +++G+PRF + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y + G++ + R Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11 Identity = 53/178 (29.78%), Postives = 91/178 (51.12%), Query Frame = 2 Query: 167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 R+L+ G GFIG+HL ++L+++ ++ +D GS + ++IG+PRF I DV+ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +D S V PI R Y K++ D +++ Y + G++ + R Sbjct: 317 RVLILGVNGFIGNHLTERLLKDGNYDIYGMD---IGSSA-IERFIGNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDNSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFR 489
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11 Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 2 Query: 167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPI-GVRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 R+L+ G GFIG+HL ++L+++ + E+ +D S L ++I HP F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG D +DES V PI R Y K++ D +++ Y + G+ + R Sbjct: 319 RVLILGVNGFIGNHLTERLLKDGRYEIYGLDI----SASALGRFIDHPHFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDHSFDEDESRL-IVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFR 491
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 2 Query: 167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYGDPLVHPQDE-SYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673 R+L+ G GFIG+HL ++L+++ EV +D GS + ++IGHP F + D++ E + + D I L A+PI Y NP++ + + L ++ + RI+ STS+VYG H DE S V PI R Y K++ D +++ Y + G+ + R Sbjct: 319 RVLILGVNGFIGNHLTERLLQDGGYEVYGLD---IGSSA-VDRFIGHPNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFR 491 The following BLAST results are available for this feature:
BLAST of FC920187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920187 ID=FC920187; Name=FC920187; organism=Citrus clementina; type=EST; length=678bpback to top |