FC920187

Overview
NameFC920187
Unique NameFC920187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14125 contig Ccv1_Contig14125:40..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 53/186 (28.49%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  143 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            S   +   R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y ++ G++  + R
Sbjct:  309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 51/178 (28.65%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            R+L+ G  GFIG+HL ++L+ +++ ++  +D    GS D + +++G+PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y  + G++  + R
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 53/178 (29.78%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            R+L+ G  GFIG+HL ++L+++   ++  +D    GS   + ++IG+PRF  I  DV+      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +D S    V PI   R  Y   K++ D +++ Y  + G++  + R
Sbjct:  317 RVLILGVNGFIGNHLTERLLKDGNYDIYGMD---IGSSA-IERFIGNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDNSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFR 489          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYG--DPLVHPQDESYWGNVNPI-GVRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            R+L+ G  GFIG+HL ++L+++ + E+  +D     S   L ++I HP F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG  D     +DES    V PI   R  Y   K++ D +++ Y  + G+   + R
Sbjct:  319 RVLILGVNGFIGNHLTERLLKDGRYEIYGLDI----SASALGRFIDHPHFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDHSFDEDESRL-IVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFR 491          
BLAST of FC920187 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  167 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLDMLGLAKRVGARILLTSTSKVYGDPLVHPQDE-SYWGNVNPIG-VRSCYDEGKRVADTLMFDYHLQHGIEIRIAR 673
            R+L+ G  GFIG+HL ++L+++   EV  +D    GS   + ++IGHP F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STS+VYG    H  DE S    V PI   R  Y   K++ D +++ Y  + G+   + R
Sbjct:  319 RVLILGVNGFIGNHLTERLLQDGGYEVYGLD---IGSSA-VDRFIGHPNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFR 491          
The following BLAST results are available for this feature:
BLAST of FC920187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ARNA_YERPA1.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP31.216e-1128.49Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP51.588e-1128.65Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH3.539e-1129.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS43.539e-1129.21Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH4.622e-1130.51Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32005B03EF RVDevelop1 Citrus clementina cDNA clone C32005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920187 ID=FC920187; Name=FC920187; organism=Citrus clementina; type=EST; length=678bp
GGGAATAAGAAAATCTGGGTTTTTCAGTATTGTGTGTAAGCTTTCAGTGA
TTTAAGAAGTTTGAGGAATGGCTCAGGAAATTTCAAATGGAAATCACAAC
TCTGCTTCTAAACCACCTCCAACTCCGTCCCCTTTGAGATTCTCCAAATT
TTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGATTTATCG
GCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAGGTGATT
GTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAAATGGAT
TGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGCCATTGT
TGATCGAGGTTGATCAAATCTATCACCTTGCTTGTCCTGCCTCCCCAATC
TTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGATTGGTAC
ATTGGACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTTTGCTTA
CATCAACTTCAAAGGTTTACGGAGATCCTCTTGTGCATCCCCAGGATGAG
AGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTATGATGA
GGGAAAAAGAGTTGCAGACACTTTGATGTTTGACTACCATCTGCAGCATG
GGATTGAGATAAGGATTGCTAGGATTTT
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