FC920200

Overview
NameFC920200
Unique NameFC920200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12635 contig Ccv1_Contig12635:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920200 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  321 RSLSQVLNFMDQMTESPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEER 671
            R++ Q+++ MD++ E           SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++PK + E+
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIPKTEVEK 227          
BLAST of FC920200 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 44/126 (34.92%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  321 RSLSQVLNFMDQMTESPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEER 671
            RS+ Q+L+ MD++ E       R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+              R     Y +R+ LP+   + +++KAE+K+GVL +T+PK K ER
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIER 224          
BLAST of FC920200 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  321 RSLSQVLNFMDQMTE--------SPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEER 671
            R++ Q+L+ MD++ +        +P  S   G +R  WD  E D  + +  DMPGL +E+V+V +E + LVIR                      SV  Y  R+ LP++  ++ +++AE+KNGVL VTVPK + ER
Sbjct:   98 RTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKS-KVRAELKNGVLLVTVPKTEVER 232          
The following BLAST results are available for this feature:
BLAST of FC920200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_SOLLC6.507e-1333.85Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA8.498e-1334.92Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ7.194e-1233.8226.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC32005C08EF RVDevelop1 Citrus clementina cDNA clone C32005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920200 ID=FC920200; Name=FC920200; organism=Citrus clementina; type=EST; length=682bp
GGAGCAAGAAATCAGCCGCAGTCTCAAAAGTATTTTGAAATCTCTGCATT
GTTTTGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCT
CAAGAGGCTTGTTTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCG
TCGCTCCTTCTGCTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTT
CGTCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCG
TTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGT
TTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATG
GATCAGATGACGGAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCG
CCGAGGCTGGGATGCCAAAGAAACCGATGACGCATTGAACCTCAGCATCG
ACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAAC
ACTCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGAAGAGAG
CGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAGGA
CTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAGGTGACGGTG
CCCAAGGTGAAGGAAGAGAGAGGGCTGATGTG
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