FC920205

Overview
NameFC920205
Unique NameFC920205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6036 contig Ccv1_Contig6036:6..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920205 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  166 IPAEFVRPEKEQPASATYHGPAPEIPTIDLD-DPVQDR-LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQE-EKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNE-------EYAKYMREVVDKLFTYLSLGLG 657
            +P  FV P K++      H   P I    +D DP++ + +V  + +AS +WG FQV NHGIP+ ++ +     ++FFE   E +K+ Y+R    K V      L K      SW D +F  + P           NPPS +           +++K ++++   L   LS GLG
Sbjct:   37 VPQIFVLPPKDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP-----------NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLG 199          
BLAST of FC920205 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  238 IPTID---LDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKK----SWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLG 657
            IP ID   LD   +   +  IA    EWG FQ+ NHGIP +L+ +++ V  E ++L +EE+   S+P    D       L KE +G++     W D     V+     N   WP+NPP +    +EY + +R++ +K+   +   LG
Sbjct:    3 IPVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECYKL-REERFEGSKPVQLLDT------LVKEGDGQRLDNVDWED-----VFVLQDDNE--WPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLG 135          
The following BLAST results are available for this feature:
BLAST of FC920205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ACCH3_SOLLC7.461e-1129.311-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_MUSAC9.744e-1131.291-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC32005D01EF RVDevelop1 Citrus clementina cDNA clone C32005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920205 ID=FC920205; Name=FC920205; organism=Citrus clementina; type=EST; length=659bp
GGCAAGTGCGTAGCGTTACTGCGTCACAGTCGCAGGAAAGGCGCAAGCCA
AGAAAGAGAGAGGGAGAGAAGGAAAAGAAAAGTGGTGGGGTTTTGCTGGA
AAATAAAATTAATGGAGGTGGAGAGGGTCCAAGCCATTGCTTCCTTATCC
CATTCAAATGGCACAATTCCAGCAGAGTTCGTAAGACCCGAAAAAGAACA
GCCAGCAAGCGCAACGTACCACGGCCCCGCTCCTGAAATCCCCACGATCG
ATCTCGACGACCCCGTTCAAGACAGACTCGTACGTTCCATCGCGGAAGCC
AGCCGGGAGTGGGGGATTTTCCAGGTTACAAACCACGGGATACCTAGTGA
CCTCATCGGTAAACTGCAAGCCGTCGGCAAAGAATTTTTTGAGCTCCCTC
AGGAAGAGAAAGAAGTGTATTCTCGTCCGGCTGATGCAAAAGACGTGCAA
GGATACGGCACAAAGTTACAGAAAGAAGTCGAAGGAAAGAAATCTTGGGT
TGATCATCTCTTCCACAGGGTTTGGCCTCCGTCTTCTATCAACTACCGCT
TTTGGCCCAACAACCCTCCTTCTTACCGAGCGGTGAATGAGGAGTATGCA
AAGTACATGAGGGAGGTGGTGGATAAGTTGTTTACGTATCTTTCGTTGGG
ACTGGGTGT
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