FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 267.7 bits (683), Expect = 4.488e-71
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D +FGFIV+DG+G LFGTL GNT
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 4.488e-71
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D +FGFIV+DG+G LFGTL GNT
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 4.488e-71
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D +FGFIV+DG+G LFGTL GNT
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 4.488e-71
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 2
Query:  221 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D +FGFIV+DG+G LFGTL GNT
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.861e-71
Identity = 132/163 (80.98%), Postives = 144/163 (88.34%), Query Frame = 2
Query:  224 GQET--DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            G+ET  D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQISRV+KML DEFGTASNIKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D +FGFIVMDGNG LFGTL GNT
Sbjct:    3 GEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNT 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.706e-67
Identity = 121/165 (73.33%), Postives = 140/165 (84.85%), Query Frame = 2
Query:  212 TMSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            T       D+N+E+WKIK+LIK+LE ARGNGTSMISLI+PP+DQ++R+ +ML +E+GTASNIKSRVNR SVL AITS Q RLKLYNKVPPNGLV+Y GT++TD+GKEKKV IDFEPFK IN SLYLCDNKFHTEAL  LL  D +FGFI+MDGNG LFGTL GNT
Sbjct:    9 TAGGDDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNT 173          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.071e-64
Identity = 123/164 (75.00%), Postives = 137/164 (83.54%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            + D Q  DK +E WKIKKLIK LE+ARGNGTSMISLI+ P DQI++V KML +E+GTASNIKSRVNR SVL AITSAQQRLKLY KVP NGLV+Y GT+VTD+GKEK V ID EPFKPIN SLYLCDNKFHT  L ELLESD +FGFIV+DGNG LFG L G+T
Sbjct:    4 VDDQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGST 167          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 116/159 (72.96%), Postives = 138/159 (86.79%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            E +KNIEIWK+KKL+++LE ARGNGTSMISL++PP+  I    KML DE+GTASNIKSRVNR SVL+AITS QQ+LKLYN +P NGLVLY G ++T+DGKEKKVT D EP+KPIN SLYLCDNKFHTE L+ELL++D +FGFIVMDG GTLFG++SGNT
Sbjct:    4 EVEKNIEIWKVKKLVQSLEKARGNGTSMISLVIPPKGLIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNTLPKNGLVLYCGDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNT 162          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.444e-63
Identity = 110/164 (67.07%), Postives = 140/164 (85.37%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTERCFI 721
            + D N++ WK+++LI  LE+ARGNGTSMISL++ P+D+ISR++KML DE+GTASNIKSRVNR SVL+AITS QQRLKLYN+ P NGLV+Y GT++T+DGKEKKV IDFEPFKPIN SLYLCDNKFH +AL ELLE+D +FGFI++DGNG L+G + G++    +
Sbjct:    3 DNDTNVKQWKVRRLIATLEAARGNGTSMISLVIKPKDEISRISKMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNRTPQNGLVVYCGTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVLL 166          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 107/159 (67.30%), Postives = 132/159 (83.02%), Query Frame = 2
Query:  227 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGN 703
            +  +K IEIWKI++L+K L +  GNGTSMI+LI+PP +QISR + ML +E+GTASNIKSRVNR SVL+AITS ++RLKLYNKVP NGLV+Y G V+ +  K +K+ IDFEPFKPIN S YLCDNKFHTEAL ELLESD +FGFIVMDG+ TL+G +SG+
Sbjct:    3 ETAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGS 161          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_MOUSE4.488e-7180.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU4.488e-7180.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN4.488e-7180.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN4.488e-7180.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME5.861e-7180.98Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL6.706e-6773.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI1.071e-6475.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST3.115e-6472.96Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO3.444e-6367.07Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO2.162e-5767.30Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
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