FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.192e-39
Identity = 77/159 (48.43%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGN 703
            E +  I+ WKI++LI+ LE A+GNGTS+ISLI+PP++QIS + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP + IN + +LC+N F+T+ L ++L+   +FGFI+MDGNG+LFGTL GN
Sbjct:    4 EQEDAIKGWKIRRLIEYLEKAKGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGN 162          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  236 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            D+ I  ++ K+ ++ L    G GT +ISL +PP  QIS V   L DE+ T+SNIKS+  R++VLAAI S   RLK Y   PPNGLV + G + T   + +  T   EP +PI   +Y CD++FHTE L  +L+    +G IV+D      G L+G
Sbjct:    7 DEQIRRYEFKRALEELSKLHGRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNG 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.014e-28
Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            E D+ I  ++ K+ ++ L    G GT +ISL +PP  QIS V   L DE+ T+SNIKS+  R++VLAAI S   RLK Y   PPNG V + G + T   + +  T   EP +PI   +Y CD++FH E L  +LE    +G IV+D      G L+G
Sbjct:    5 EDDEQIRRYEFKRALEELSKLHGRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNG 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26
Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  245 IEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            +E ++ +K+I+ LE+ RG GT +I++ +PP +++S V   + +E+  ASNIKS+  R++V +AI    QRLK+  + P NGLV+  GT V D  KEK V    EP +P++  +Y CD+KF+ E L E LE    +G +VMD      G + G
Sbjct:    7 VERYRFRKMIERLENLRGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKG 157          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 2
Query:  239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            K+ E++++KK ++ L+S RG  T ++SL +P    I++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 157          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            K+ E++++KK ++ L+S RG  T ++SL +P    I++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY K P NGL L+ G V   +G          P +P+   LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 157          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 59/152 (38.82%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            EI+++KK +K LE  +G GT ++S+ +PP  QIS V K + DE G ++NIKS+  R++V +AI    QRLKL+ K P  GLV++ G +     G EK  T  F+P + +    Y CD++F  E L +++E    +G +V+D   +   TL G
Sbjct:    8 EIYEVKKTLKELEDKKGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRG 159          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 2
Query:  239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            K+ E++++KK ++ L+  RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY + P  GL L+ G V   +G          P +P+N  LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    4 KSAEMYELKKKVEELKKIRGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRG 157          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            T ++ +++++KK I  L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    5 TSRDAQLYELKKKIDELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRG 160          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            T  + +++++KK I+ L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L     +G I ++ N    G L G
Sbjct:    5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 160          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST1.192e-3948.43Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO2.109e-2841.94Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC8.014e-2841.40Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_METKA1.511e-2640.13Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_PYRKO9.796e-2638.96Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THEON1.671e-2538.96Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METST3.723e-2538.82Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_THESM4.862e-2537.01Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRFU4.862e-2538.46Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRAB4.862e-2538.46Peptide chain release factor subunit 1 OS=Pyrococc... [more]

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Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
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