FC920208
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.192e-39 Identity = 77/159 (48.43%), Postives = 115/159 (72.33%), Query Frame = 2 Query: 230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGN 703 E + I+ WKI++LI+ LE A+GNGTS+ISLI+PP++QIS + + L D G A NIKS+ +++V AI S +Q+L + ++PPNGL+LY G + +D K EK++ EP + IN + +LC+N F+T+ L ++L+ +FGFI+MDGNG+LFGTL GN Sbjct: 4 EQEDAIKGWKIRRLIEYLEKAKGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGN 162
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28 Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 2 Query: 236 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 D+ I ++ K+ ++ L G GT +ISL +PP QIS V L DE+ T+SNIKS+ R++VLAAI S RLK Y PPNGLV + G + T + + T EP +PI +Y CD++FHTE L +L+ +G IV+D G L+G Sbjct: 7 DEQIRRYEFKRALEELSKLHGRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNG 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.014e-28 Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 2 Query: 230 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 E D+ I ++ K+ ++ L G GT +ISL +PP QIS V L DE+ T+SNIKS+ R++VLAAI S RLK Y PPNG V + G + T + + T EP +PI +Y CD++FH E L +LE +G IV+D G L+G Sbjct: 5 EDDEQIRRYEFKRALEELSKLHGRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNG 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26 Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 2 Query: 245 IEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 +E ++ +K+I+ LE+ RG GT +I++ +PP +++S V + +E+ ASNIKS+ R++V +AI QRLK+ + P NGLV+ GT V D KEK V EP +P++ +Y CD+KF+ E L E LE +G +VMD G + G Sbjct: 7 VERYRFRKMIERLENLRGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKG 157
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26 Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 2 Query: 239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 K+ E++++KK ++ L+S RG T ++SL +P I++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L +G I ++ N G L G Sbjct: 4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 157
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25 Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 2 Query: 239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 K+ E++++KK ++ L+S RG T ++SL +P I++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY K P NGL L+ G V +G P +P+ LY CD F TE L E+L +G I ++ N G L G Sbjct: 4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 157
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25 Identity = 59/152 (38.82%), Postives = 91/152 (59.87%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 EI+++KK +K LE +G GT ++S+ +PP QIS V K + DE G ++NIKS+ R++V +AI QRLKL+ K P GLV++ G + G EK T F+P + + Y CD++F E L +++E +G +V+D + TL G Sbjct: 8 EIYEVKKTLKELEDKKGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRG 159
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25 Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 2 Query: 239 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 K+ E++++KK ++ L+ RG T ++SL +P +++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY + P GL L+ G V +G P +P+N LY CD F TE L E+L +G I ++ N G L G Sbjct: 4 KSAEMYELKKKVEELKKIRGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRG 157
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25 Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2 Query: 233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 T ++ +++++KK I L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L +G I ++ N G L G Sbjct: 5 TSRDAQLYELKKKIDELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRG 160
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25 Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2 Query: 233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 T + +++++KK I+ L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L +G I ++ N G L G Sbjct: 5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 160 The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bpback to top |