FC920208
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25 Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2 Query: 233 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 T + +++++KK I+ L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L +G I ++ N G L G Sbjct: 5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRG 160
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25 Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 2 Query: 254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 ++ KK ++ L+ G GT +ISL +PP QIS V + L +E+ T+SNIKS+ R++VLAAI S RLK Y + P GLV + G + T + + T EP +PI +Y CD+ FH E L L+ +G IV+D G L G Sbjct: 9 YEFKKALEELKDLHGRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKG 157
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24 Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 E++K KK +K L +G GT ++S+ +P QIS V K + DE G ++NIKS+ R++V +AI QR++L+ P NGLVL+ G + G EK T FEP +PI Y C+N+F E L ++E +G V+D TL G Sbjct: 8 ELYKFKKTLKELSEKKGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRG 159
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24 Identity = 58/152 (38.16%), Postives = 89/152 (58.55%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 E+++ K+ ++ L RG GT ++S+ +PP QIS V K + +E ++NIKS+ +++V +AI QRLKL+ K P GLV++ G V G EK T FEP +PI +Y C+++F+ E L E+LE +G V+D TL G Sbjct: 8 ELFEFKRTLQELSDKRGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKG 159
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23 Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 2 Query: 251 IWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 +++ K+ ++ LE +G GT +I+L +PP I+ V+ L E ASNIKS+ R +VLA I + RLK + K P NG+V+ +G VV +GKEK +T EP +P+ Y CD+KF+ + L E+L +G IV+D G L G Sbjct: 6 MYEFKRKLEELEKYKGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKG 154
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22 Identity = 58/152 (38.16%), Postives = 89/152 (58.55%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVV-TDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 +++ KK++K L+S +G GT +ISL +P +IS V + L +E ASNIKS+ R++V +AI + QRLKL + G+V++ G V + G EK T EP +PI +Y CD++F+ E L E LE +G I++D N + G Sbjct: 8 QLYLFKKMLKELKSKKGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKG 159
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22 Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 E ++ KK ++ L +G T +ISL +PP QI VT L DE G A+NIKS++ R +V AI S RL+ +KVP NG+V +TG V K + P PI Y CD+ F+ E L ++L+ +G +V+D G L G Sbjct: 8 EKYEFKKKLEGLRDKKGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVG 158
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22 Identity = 57/163 (34.97%), Postives = 92/163 (56.44%), Query Frame = 2 Query: 218 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 +D ++ + ++ +K+I+ L G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+VL++G V T G+ VT E P +P+ + Y CD+ F T+ L ++L FG IV+D G L G Sbjct: 3 TDAEDVSNDRRKYEFRKVIEELREYEGSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKG 165
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22 Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTERCF 718 E ++ KK +++L +G T +ISL +P QI VT L DE G A+NIKS++ R +V AI S RL+ +KVP NG+V +TG V K + P +PI Y CD+ F+ E L ++L+ FG +V+D G L G + F Sbjct: 8 EKYEFKKKLESLRDKKGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAF 164
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21 Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2 Query: 218 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 SD QE + ++ +K+I+ L G+GT ++++ +P Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + G+ VT E P +P+ + Y CD+ F TE L +LE FG IV+D G L G Sbjct: 3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKG 165 The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bpback to top |