FC920208
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21 Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 2 Query: 254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTERCF 718 ++ KK +++L +G GT +ISL +PP QIS V L +E ASNIKS++ + +V AI S RL+ Y VP NG+V +TG V K T EP +PI Y CD+ F L ++L+ +G +V+D G L+G F Sbjct: 10 YEFKKKLESLRGKKGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAF 163
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20 Identity = 54/165 (32.73%), Postives = 92/165 (55.76%), Query Frame = 2 Query: 215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706 MS+ TD ++ KK +K L+ RG GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD++F+TE+L + ++ +G I++D N GT+ G T Sbjct: 1 MSENSSTD----MYLFKKSLKELKGKRGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20 Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 ++ +K+I+ L+ G+GT ++++ +PP QIS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G V + G+ VT E P +PI + Y CD+ F TE L E+L +G IV+D + G L G Sbjct: 15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20 Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 ++ +K+I+ L+ G+GT ++++ +PP QIS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G V + G+ VT E P +PI + Y CD+ F TE L E+L +G IV+D + G L G Sbjct: 15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20 Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2 Query: 248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 E + KK ++ L+S G T +ISL +PP QIS VTK L +E ASNI S++ R +V A+ S +L+ +K+P NG+V +TGTV T + V P +P+ +Y CD+ F+ E L E+L +G +++D G L G Sbjct: 8 EKYVFKKQLETLKSKNGRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVG 158
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19 Identity = 61/165 (36.97%), Postives = 94/165 (56.97%), Query Frame = 2 Query: 215 MSDGQETDKNI-EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700 MS+ QE +++ + ++ +K+I+ L+ +G+GT ++S+ +P IS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NGLV+++G T G+ VT E P PI + Y CD++F TE L +L FG IV+D G L G Sbjct: 1 MSEQQEQEQSDKQKYEFRKVIEELKGYQGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKG 165
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19 Identity = 52/165 (31.52%), Postives = 90/165 (54.55%), Query Frame = 2 Query: 215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ + +G I++D N GT+ G T Sbjct: 1 MSGNSSTD----LYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKT 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19 Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 2 Query: 215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ +G I++D N GT+ G T Sbjct: 1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19 Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 2 Query: 215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ +G I++D N GT+ G T Sbjct: 1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18 Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 2 Query: 215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706 MS TD ++ KK ++ L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ +G I++D N GT+ G T Sbjct: 1 MSGNSSTD----MYLFKKSLRELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161 The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bpback to top |