FC920208

Overview
NameFC920208
Unique NameFC920208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNTERCF 718
            ++ KK +++L   +G GT +ISL +PP  QIS V   L +E   ASNIKS++ + +V  AI S   RL+ Y  VP NG+V +TG V     K    T   EP +PI    Y CD+ F    L ++L+    +G +V+D      G L+G     F
Sbjct:   10 YEFKKKLESLRGKKGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAF 163          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 54/165 (32.73%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            MS+   TD    ++  KK +K L+  RG GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD++F+TE+L + ++    +G I++D N    GT+ G T
Sbjct:    1 MSENSSTD----MYLFKKSLKELKGKRGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            ++ +K+I+ L+   G+GT ++++ +PP  QIS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G V +  G+   VT   E P +PI +  Y CD+ F TE L E+L     +G IV+D   +  G L G
Sbjct:   15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  254 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            ++ +K+I+ L+   G+GT ++++ +PP  QIS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G V +  G+   VT   E P +PI +  Y CD+ F TE L E+L     +G IV+D   +  G L G
Sbjct:   15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  248 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            E +  KK ++ L+S  G  T +ISL +PP  QIS VTK L +E   ASNI S++ R +V  A+ S   +L+  +K+P NG+V +TGTV T   +   V     P +P+   +Y CD+ F+ E L E+L     +G +++D      G L G
Sbjct:    8 EKYVFKKQLETLKSKNGRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVG 158          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 61/165 (36.97%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  215 MSDGQETDKNI-EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSG 700
            MS+ QE +++  + ++ +K+I+ L+  +G+GT ++S+ +P    IS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NGLV+++G   T  G+   VT   E P  PI +  Y CD++F TE L  +L     FG IV+D      G L G
Sbjct:    1 MSEQQEQEQSDKQKYEFRKVIEELKGYQGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKG 165          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 52/165 (31.52%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++ +  +G I++D N    GT+ G T
Sbjct:    1 MSGNSSTD----LYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKT 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++    +G I++D N    GT+ G T
Sbjct:    1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++    +G I++D N    GT+ G T
Sbjct:    1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161          
BLAST of FC920208 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  215 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDXQFGFIVMDGNGTLFGTLSGNT 706
            MS    TD    ++  KK ++ L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++    +G I++D N    GT+ G T
Sbjct:    1 MSGNSSTD----MYLFKKSLRELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKT 161          
The following BLAST results are available for this feature:
BLAST of FC920208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_METBU5.563e-2136.77Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METVS1.239e-2032.73Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALSA2.114e-2037.75Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_HALS32.114e-2037.75Peptide chain release factor subunit 1 OS=Halobact... [more]
RF12_METAC4.709e-2037.09Peptide chain release factor subunit 1-2 OS=Methan... [more]
RF1_HALMA1.789e-1936.97Peptide chain release factor subunit 1 OS=Haloarcu... [more]
RF1_METMP5.207e-1931.52Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM68.881e-1931.52Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM58.881e-1931.52Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM71.978e-1830.91Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank descriptionC32005D04EF RVDevelop1 Citrus clementina cDNA clone C32005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920208 ID=FC920208; Name=FC920208; organism=Citrus clementina; type=EST; length=724bp
TCGCCGGGGAATTAGAGGGAAAACAAGGTTCCCCATTGGAAAACCCTACC
CTGCGGCCAAGGGACGGGATTCTTCTCCTTTAGAGATTTGTCATTGGAGG
TCTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCC
GTCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTC
AACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAG
ATATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAA
TGGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTC
GGGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAA
AGTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCA
GAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATA
CTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGAC
TTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAA
GTTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGNACAATTTG
GGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGA
AACACAGAGAGGTGCTTCATAGTT
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