FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.436e-54
Identity = 107/179 (59.78%), Postives = 134/179 (74.86%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +I IG+ G++    +LKA L+EF + L+FVFAG  S +AF+KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT++    YWIAQ LGS+VACLLL F T G       +++G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    3 KIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.537e-53
Identity = 103/178 (57.87%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  125 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A G+  ++    +L+A LAEF S L+FVFAG  S +A++KLT   A    GL++ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT++  + YWIAQLLGS  AC LLK+ TGGL     ++++G+ S   VV EI++TF LVYTVYATA DPKKG+LGTIAP+AIG IV
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIV 181          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.029e-52
Identity = 106/178 (59.55%), Postives = 134/178 (75.28%), Query Frame = 2
Query:  125 IAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            IA G   ++    +LKA +AEF S L+FVFAG  S +A++KLT G    PAGL++ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L  + YWIAQLLG++V  +L++F T G+ T    L SGV ++  VV EI++TFGLVYTVYATA DPKKG+LGTIAPIAIGFIV
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIV 180          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.755e-52
Identity = 97/180 (53.89%), Postives = 133/180 (73.89%), Query Frame = 2
Query:  134 GTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            G   EA+HPD+++A LAEF S  +FVFAG+ S +A  KL        G +TP GL+  +LAHA ALF AVS   N+SGGHVNPAVTF A +GG I+++R+I YW+AQL+G+++ACLLL+ +T GL    F ++SGVS  + ++ EI++TF LVY VY+TA+DPK+G++G IAP+AIG IV
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIV 191          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 98/181 (54.14%), Postives = 133/181 (73.48%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGA--STPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            R  +G   +A+HPD ++AA++EF +  IFVFA + S ++  K+    +  ST  GL++ +LAHA  L VAV+V  N+SGGHVNPAVTFGA VGG ++L+R++LYW AQLLG+V A LLL+ +TGG     FAL+SGV   +AV+ E VMTFG VY  YAT VDPK+G+LGTIAP+A+GF++
Sbjct:   12 RFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLL 192          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.324e-51
Identity = 97/183 (53.01%), Postives = 132/183 (72.13%), Query Frame = 2
Query:  110 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            M   R + G   EA+HPD+++A+LAEF S  IFVFAG+ SG+A  K+    A +   L++ +LAHAFALF AVS   ++SGGHVNPAV+FGA +GG I+++R++ YWIAQLLGS+VA L+L+  T  +  S F +S GV   +  + E+VMTFGL+YTVY TA+DPK+G +  IAP+AIG IV
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIV 183          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.334e-43
Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +I +G   EA+ PD +KA + EF +  +FVFAG  S MA   L     +T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI++ R+ LYWI QLL S  AC LL + TGG+ T    L+SGVS    +++EI++TF L++TVYAT VDPKKG+L    P+  GF+V
Sbjct:    3 KIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLV---GNTLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVV 177          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.482e-38
Identity = 86/167 (51.50%), Postives = 112/167 (67.07%), Query Frame = 2
Query:  158 PDALKAALAEFFSMLIFVFAGQASGMAFSKL-TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFI 655
            P A +AAL+EF +  +FVFA + S     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+  R+ LYW AQLLG+V+A LLL+ ++GG+    F L   +   +A++ E+VMTFGLVYTVYATAVD + G  G IAP+AIG +
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLV 188          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.350e-36
Identity = 85/180 (47.22%), Postives = 113/180 (62.78%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLE-TSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++A+G   EA+ P  L+A +AE     +FVF+G  S MA +KL  GG  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHITL RS LY  AQLLGS +ACLLL   TGG E     A + GV +  AV  E V+TF L++ VYAT VD ++  +G + P+ +G +V
Sbjct:    3 KLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA-VGALGPLLVGLVV 180          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.131e-36
Identity = 82/180 (45.56%), Postives = 108/180 (60.00%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            + A+G   EAS    ++A LAE     +FVFAG  S MA  KL  GG  T  GL + +LAH   + V VS G ++SGGH+NPAVT G    G ITL RS LY  AQLLGS +ACLLL F +         AL +GV +   V+ E V+TF L++ VYAT VDP++  +G + P+ +G +V
Sbjct:    3 KFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-VGGMGPLLVGLVV 181          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TIP22_ARATH1.436e-5459.78Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP21_ARATH3.537e-5357.87Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ1.029e-5259.55Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP32_ARATH1.755e-5253.89Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP32_MAIZE8.712e-5254.14Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIPA_PHAVU4.324e-5153.01Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP41_ARATH4.334e-4348.60Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ5.482e-3851.50Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP43_ORYSJ1.350e-3647.22Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE5.131e-3645.56Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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