FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.871e-32
Identity = 79/180 (43.89%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++ +G  GEAS PD  +  L E     +FVF G  + M     T G  ST  G L + +L  A  + V  + G +ISGGHVNPAVT    VGGH+TL RS LY  AQ+L S  AC LL++ TGGL T   AL+ GV     VV E V TF L++ +YAT +DP+K  L    P+  G +V
Sbjct:    3 KLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMTDGATTKG--STAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLV 179          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 76/183 (41.53%), Postives = 103/183 (56.28%), Query Frame = 2
Query:  110 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +P+ ++ +G  GEA  P  L+A   E     +FVF G AS +   K   GGA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHITL RS LY  AQL GS +ACLLL+  TGG  T   AL+ GV     V  E V TF L+  + AT +DP++       P+  G +V
Sbjct:    4 LPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLV 185          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  146 EASHPDA--LKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            EA  PD   ++A LAE     +FVF G ++ MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S +AC+LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP +  + TI P+  G IV
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIV 188          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 74/173 (42.77%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  143 GEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            GE      ++A LAE     +FVF G A+ MA       GA+ P A L   ++A A A  V V+ G ++SGGH+NPAVT      GHIT  RS LY  AQLL S +AC+LL++ TGG+ T    L SG+     +V EI++TF L++ VYAT +DP+    G   P+  G IV
Sbjct:   11 GEVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPG-FGPLLTGLIV 182          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 71/165 (43.03%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            ++A LAE     +FVF G ++ MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S  AC+LL+F +GG+ T   AL  G+S    +V E+++TF L++  YA  +DP +  +  I P+  G IV
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIV 186          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.727e-29
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  158 PDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG 625
            P AL+A  AEFFS  +FVF    S ++   LT    S  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT+  +I YW +Q+LGS  ACL+L + + G       ++  ++ + A + E V+TF +VYTV+  A DP+ G  G
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFG 168          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 66/165 (40.00%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  161 DALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFI 655
            +AL+  ++EF S   FV A   S M+  KL  G  S P G++  ++A+A AL  +V +  N+SGGHVNPAVTF   V G I++  ++ YW +Q++ SV+ACL+LK +        + ++  ++ + A V E V+ F LVYTV+ TA DP++G    + PI IGF+
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFV 183          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 2
Query:  164 ALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVY 589
            +L++ LAEF S  +FVF    S ++   LT    ++ AG L++ ++A AF LF AV + A++SGGHVNPAVTF   +GG I +  ++ YW +QLLG+  ACL L   + G E     ++  ++ +   V E V+TF LVYTV+
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVH 160          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY  AQ LG++    L+K    G        A  +S+G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 216          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 65/181 (35.91%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 216          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TIP43_MAIZE5.871e-3243.89Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ1.001e-3141.53Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE4.970e-3142.53Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ2.467e-3042.77Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE2.467e-3043.03Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP51_ORYSJ2.727e-2942.95Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH1.954e-2740.00Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE2.022e-2441.26Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
PIP26_MAIZE4.217e-2236.16Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP24_MAIZE9.394e-2235.91Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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