FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 65/181 (35.91%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 217          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 63/177 (35.59%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS P       G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS+G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 66/181 (36.46%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS--------AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG+V    L+K    G ++S        A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK----GFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 211          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTD----GGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + F   TD    GGA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++ Y +AQ LG+     L+K   ST     GG    A  LS G +    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSV 211          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21
Identity = 64/181 (35.36%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   +D   +T        G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G ++S +A        LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK----GFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFAV 216          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPA--------GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS           G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG+V    L+K F +   +     A +L+SG S    +  EIV TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 219          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS         G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K F +   +     A +L+SG S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 62/175 (35.43%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGAS----TPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD   +    T  G++  + A    +F+ V   A ISGGH+NPAVTFG  +   +TL+R+++Y +AQ LG++    L+K       T     A  LS G S    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 211          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 65/179 (36.31%), Postives = 101/179 (56.42%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG++    L+K      F+  G    A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYG--GGANTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 64/171 (37.43%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGG----LETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +AA+AEF + L+F++   A+ + + K TD  AS   GL+  + +    +FV V   A ISGGH+NPAVTFG F+   ++LLR+++Y IAQ  G++    L+K    G        A +++ G +   A   E++ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAV 207          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
PIP23_MAIZE9.394e-2235.91Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP25_MAIZE2.093e-2135.59Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP25_ORYSJ2.733e-2136.46Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_ARATH3.570e-2138.76Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ6.089e-2135.36Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE6.089e-2137.43Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_MAIZE7.953e-2136.72Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_ARATH1.039e-2035.43Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ1.039e-2036.31Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA1.357e-2037.43Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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