FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.314e-20
Identity = 61/177 (34.46%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   +D GA+         G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 63/169 (37.28%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M++F+F    S + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT    ++ +LG   P+AIGF V
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSV 179          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  143 GEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVAC----LLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            GE       +A +AEF + L+F++   A+ +   K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++ Y IAQ LG++         +K     L   A  ++ G S   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   29 GELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAV 205          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 61/164 (37.20%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF+ L +VF G  + + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 61/164 (37.20%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF+ L +VF G  + + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 64/169 (37.87%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M++F+F    S + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA  +L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIGF V
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSV 178          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDG---GASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF--------ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            P E +     +AA+AEF + L+F++    + + + + +D    G +   G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+G  ++L+R++LY IAQ  G++    L K    G + S +         +S G +   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   30 PDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAK----GFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 214          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 63/177 (35.59%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDG---GASTPAGLISA-SLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++   A+ + +   TD    GA    G +    +A AF   +F+ V   A +SGGH+NPAVT G F+   ++L+R++LY  AQ LG++    L+K     L       A  L++G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 214          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 63/169 (37.28%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M +F+F    S + F        ++ A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++  L+S   GV S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIGF V
Sbjct:   12 RAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGFSV 178          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.558e-19
Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTP----AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  A        G++  + A    +FV V   A ISGGH+NPAVT G F+   ++L+R++LY +AQ LG++  C  +K       T     A  L+ G +    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
PIP23_ORYSJ2.314e-2034.46Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
AQP1_SHEEP3.947e-2037.28Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
PIP27_ARATH5.155e-2036.11Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
MIP_BOVIN1.148e-1937.20Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_SHEEP1.500e-1937.20Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQP1_BOVIN1.500e-1937.87Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP27_MAIZE1.959e-1934.74Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP24_ORYSJ1.959e-1935.59Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
AQP1_PIG1.959e-1937.28Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
PIP24_ARATH2.558e-1934.29Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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