FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 60/178 (33.71%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTD---GGASTPA-GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   +D   GG      G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++     +K        + GG    A  L+ G ++   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGG---GANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 61/164 (37.20%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF+ L +VF G  + + +   T G    P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW---TPG----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M +FVF    S + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSV 176          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M +FVF    S + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSV 176          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF+ L +VF G  + + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V  ++AT  + + G +G++A +A+GF
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +M +FVF    S + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSV 176          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF+ L +VF G  S + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL++    VS   A   EI +T   V  ++AT  + + G LG++A +A+GF
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17
Identity = 56/164 (34.15%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 652
            +A  AEFF  + +VF G  + + +       A+ PA ++  +LA    L   V    ++SG H+NPAVTF   +G  ++L R+I Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V  ++AT  + + G LG+++ +AIGF
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGF 166          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A LAEF + L+FVF G  S + +       AS+P  ++  ++A    + + V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGSPA-LSIGFSV 168          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A LAEF + L+FVF G  S + +       AS+P  ++  ++A    +   V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSV 168          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
PIP23_ARATH2.829e-1833.71Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
MIP_CANFA2.829e-1837.20Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP1_MOUSE2.829e-1834.34Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_RAT3.694e-1834.34Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
MIP_MOUSE4.825e-1835.98Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP1_PONAB8.230e-1833.73Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
MIP_HUMAN1.075e-1735.98Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_RANPI1.833e-1734.15Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP2_RAT2.395e-1733.93Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP2_MOUSE3.127e-1733.93Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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