FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A +AEF +  +FVF    S + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSV 176          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.335e-17
Identity = 67/211 (31.75%), Postives = 106/211 (50.24%), Query Frame = 2
Query:   95 KFSIKMPIYRIAIGT---------------PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            KFS + PI   A G+               PGE       +A +AEF +  +F++    + M  +  T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G  ET+   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   14 KFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 221          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 63/181 (34.81%), Postives = 98/181 (54.14%), Query Frame = 2
Query:  143 GEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS-----AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            GE       +AA+AEF + L+ V    ++ +   + +  G    AG++  + A    +FV V   A ISGGH+NPAVTF   +   ++L R+ LY +AQ +G+V    L +   GG + +     A  L++G S+   VV E+V TF LVYTV+ +A DPK+     ++  +AP+ IG  V
Sbjct:   26 GELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAV 202          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE       +A +AEF +  +F++    + M  SK T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y I Q LG++    ++K F  G   G    A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   48 PGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 225          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 62/181 (34.25%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE       +A +AEF +  +F++    + M  SK +   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y + Q LG++    ++K F  G   G    A  ++SG +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   45 PGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 60/181 (33.15%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE       +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G  +T+   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   43 PGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 220          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE       +A +AEF +  +F++    + M  SK T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y I Q LG+V    ++K F  G   G    A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   45 PGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 60/181 (33.15%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y I Q LG++    ++K F     +T    A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   43 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 220          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 61/181 (33.70%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE S     +A +AEF +  +F++    + M   K +D   S+  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G    L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   43 PGELSSWSFYRAGIAEFMATFLFLYITILTVMGL-KRSDSLCSS-VGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 220          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 59/181 (32.60%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F     +T    A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 219          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
AQP1_HUMAN4.084e-1733.13Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
PIP12_ORYSJ5.335e-1731.75Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP28_ORYSJ6.967e-1734.81Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP13_MAIZE6.967e-1734.81Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ9.099e-1734.25Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP15_ARATH1.188e-1633.15Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP12_MAIZE1.188e-1634.81Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP14_ARATH1.552e-1633.15Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP1_SOLLC2.027e-1633.70Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ARATH2.027e-1632.60Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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