FC920211

Overview
NameFC920211
Unique NameFC920211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920211_ssr456 microsatellite FC920211_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 58/171 (33.92%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF +  +F++    + M  SK +   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G   G    A A++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 221          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A LAEF + L+FVF G  S + + +           ++  ++A   A+   V    ++SG H+NPAVT    VG H++ LR++ Y  AQLLG+V    LL   T      + +  AL++  ++  AV  E+ +T  LV  ++A+  + +  N+GT A ++IGF V
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNWPQALPS-------VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSV 168          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 57/182 (31.32%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL-----KFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            P E +     +A +AEF +  +F++    + M   +  +       G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R+I Y + Q+LG++    ++     K   G L   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   45 PSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVR--ESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 223          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE S     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 57/171 (33.33%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF +  +F++    + M  +K     A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y   Q LG++    ++K F  G   G    A A++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVNKSASKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 221          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            PGE +     +A +AEF +  +F++    + M   +  +  AS   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K         L   A  ++ G +  + +  EI+ TF LVYTV+ +A D K+     ++  +AP+ IGF V
Sbjct:   42 PGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 219          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL---LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            LKA  AEF + LIFVF G  S + +        S    ++  SLA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++    +   L         +  AL++  ++  AVV E+++TF L   V+++    +   +G+ A ++IG  V
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWP-------SAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSV 169          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            +A  AEF + L+FVF G  S + + +      + P+ L    +A AF L +   V A  +ISG H+NPAVT    VG H+++LR+  Y  AQLLG+V    LL   T     G L  +  ALS+  ++  AV  E+ +T  LV  ++A+  + +  N GT A ++IGF V
Sbjct:   11 RAVFAEFLATLLFVFFGLGSALNWPQ------ALPSVL---QIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVN--ALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPA-LSIGFSV 168          
BLAST of FC920211 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQASGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVV-ACLLLKFSTGGL--ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIV 658
            LKA  AEF + LIFVF G AS + +        S    ++  +LA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++  A +L   + G      +  +L++  +   AVV E+++TF L   ++++    +   +G+ A ++IG  V
Sbjct:   11 LKAVFAEFLATLIFVFFGLASALKWP-------SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSV 169          
The following BLAST results are available for this feature:
BLAST of FC920211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
PIP15_MAIZE3.458e-1633.92Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
AQP2_BOVIN3.458e-1632.53Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
PIP2_PEA2.241e-1531.32Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_VICFA2.241e-1532.04Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.241e-1532.04Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_ORYSJ2.927e-1533.33Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_ARATH2.927e-1531.49Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
AQP5_SHEEP2.927e-1531.74Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP2_HUMAN2.927e-1536.47Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
AQP5_PIG3.823e-1531.74Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005D07EF RVDevelop1 Citrus clementina cDNA clone C32005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920211 ID=FC920211; Name=FC920211; organism=Citrus clementina; type=EST; length=658bp
GACAAACCGCTACGCAATATAATCCGGAGCACAAAACAGAGCCAGCAAGC
TTGTAAGAAGCCTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGCATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTT
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