FC920214

Overview
NameFC920214
Unique NameFC920214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3958 contig Ccv1_Contig3958:270..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK2_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 82/238 (34.45%), Postives = 118/238 (49.58%), Query Frame = 2
Query:    5 VRKQKPDAAMA-AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            VR    +A++A A K  E FSK              + ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++P+  I
Sbjct:    4 VRALLKNASLAGAPKYIEHFSK-----------FSPSPLSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLGTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEI 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK2_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 71/200 (35.50%), Postives = 104/200 (52.00%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   +   V ++A + A  +C + Y ++P+  I
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEI 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.882e-22
Identity = 75/233 (32.19%), Postives = 119/233 (51.07%), Query Frame = 2
Query:    8 RKQKPDAAMAAKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            R    D+A  +   SE+     ++   R+     + ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V V ++  E+A  +C   Y ++PE
Sbjct:   24 RSLASDSASGSGPASESGVPGQVDFYARFS---PSPLSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPE 247          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 69/197 (35.03%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V V ++  E+A  +C   Y ++PE
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPE 247          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.002e-21
Identity = 68/207 (32.85%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   80 EVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            EV  +     + ++++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E +  +C + Y S+PE
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPE 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.002e-21
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH------NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   DFT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L       +P+   H IG I+   + + V ++  E+A  +C   Y ++PE
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKH-IGSINPNCNVLEVIKDGYENARRLCDLYYINSPE 249          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 65/195 (33.33%), Postives = 107/195 (54.87%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            ++++ +++FGS    +    S  FL +ELP+R+A    E++ LP  L+   +V  V+ WY+ S  +L  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID K   V V ++A E +  +C + Y ++PE
Sbjct:   35 LSMKQLLDFGSDNACERTSFS--FLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE-KSPEDQKNLSDFVDTLIKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QSLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPKCDVVAVIQDAFESSKMLCDQYYLTSPE 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 66/207 (31.88%), Postives = 111/207 (53.62%), Query Frame = 2
Query:   80 EVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            EV  +     + ++++ +++FGS+   +    S+ FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  +L  F + RS  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID   +   V ++A E +  +C + Y ++PE
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SSAFLRQELPVRLANILKEIDILPDRLVNTSSVQLVKSWYIQSLMELVEFHE-RSPDDQKVLSDFVDTLITVRNRHHNVVPTMAQGIIEYKDSCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCNVAAVVQDAFECSRMLCDQYYLTSPE 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.608e-21
Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 2
Query:   41 KKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF------PDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAP 682
            ++L   F+ ++  ++  +   + + +T++  ++FG   T K+  +   FL  EL +R+A    E+  LP  L + P+   V +WY +SF DL  F      PDI S      F   ++ I  RH+ VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H IG ID       V  +A E+A  +C R Y +AP
Sbjct:    5 RRLLGPFTSAIARKLEHYSQFQPSSLTIQQYLDFGQTGTMKSSFL---FLKNELLVRLANIMQEISLLPPTLLKMPSRRLVSNWYCESFEDLLQFEHAQVEPDIMS-----KFNDQLQTILKRHSRVVETMAEGLIELRESEGVDIASE--RGIQYFLDRFYINRISIRMLQNQHLVVFGVVLPESPRH-IGCIDPGCDVESVVHDAYENARFLCERYYLTAP 216          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.435e-19
Identity = 72/219 (32.88%), Postives = 110/219 (50.23%), Query Frame = 2
Query:   38 AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAP 682
            ++KL   F  SL +++  +   + + +T++  ++FG   T  N   S  FL  EL +R+A    E   LP  L + P+   V +WY +SF DL  F    S+ ++   F   +  +  RH +VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H +G ID       V  +A E+A  +C R Y ++P
Sbjct:    4 SRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSAN---SYTFLKNELLVRLANIMQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAHVVETMAEGLIELRESDGVDIASE--KGIQYFLDRFYINRISIRMLQNQHLVVFGNVLPESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSP 216          
The following BLAST results are available for this feature:
BLAST of FC920214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK2_MOUSE2.365e-2234.45[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_HUMAN5.269e-2235.50[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT6.882e-2232.19[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE8.988e-2235.03[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN2.002e-2132.85[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN2.002e-2134.67[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR2.615e-2133.33[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE4.460e-2131.88[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_ASCSU7.608e-2133.18[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDHK2_CAEEL1.435e-1932.88Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]

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Properties
Property NameValue
Genbank descriptionC32005D10EF RVDevelop1 Citrus clementina cDNA clone C32005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920214 ID=FC920214; Name=FC920214; organism=Citrus clementina; type=EST; length=744bp
GGTTGTGAGAAAGCAGAAGCCAGACGCAGCAATGGCTGCTAAGAAATTGT
CGGAGACGTTTTCGAAGAGCTTGATCGAGGAGGTTGGGCGATGGGGATGC
ATGAAACAGACAGGTGTGACCTTGAGGTACATGATGGAGTTTGGCTCAAA
ACCTACAGACAAGAATTTGCTAATTTCTGCTCAGTTTCTTCACAAAGAGC
TTCCAATTAGAATCGCCAGACGAGCAATTGAGCTCGAGACACTTCCTTAC
GGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTTCGAGACTGGTATTTGGA
CTCATTTCGTGATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATG
AGAGGGATTTTACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAAT
GTGGTGCCCATGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGA
TCCCAAGATTGTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATC
GGTTTTACATGTCTAGGATCGGAATTCGTATGCTTATTGGGCAGCATGTA
GAATTGCACAATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACAC
AAAAATGTCTCCAGTGCANGTTGCTAGGAATGCTAGTGAGCATGCACATT
GTGTTTGTCTGCGGGAGTATGGCAGTGCACCCGAATTTTATATCTACGGT
GATCCCAGTTTTACATTCCCTTACGTCCTTCACACTTGCATCTC
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