FC920214

Overview
NameFC920214
Unique NameFC920214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3958 contig Ccv1_Contig3958:270..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 2 
Query:  356 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYG--SAPEFYIYGDPSFTFPYV 727
            +F  ++  I+ RH+NV   +AL +Q+ +++ +     +  + I  FLDRFYMSRIGIRML+GQ++ L +  P  + +G I T+ +   +   A+E+A  +C   YG   APE  I  DPS    YV
Sbjct:  166 NFAYLLNTIRTRHDNVAVEIALDIQEYRRKTN-----QIDNSIQIFLDRFYMSRIGIRMLLGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYGLFEAPEIQIICDPSLEMMYV 286
The following BLAST results are available for this feature:
BLAST of FC920214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK_SCHPO5.643e-1637.30[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC32005D10EF RVDevelop1 Citrus clementina cDNA clone C32005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920214 ID=FC920214; Name=FC920214; organism=Citrus clementina; type=EST; length=744bp
GGTTGTGAGAAAGCAGAAGCCAGACGCAGCAATGGCTGCTAAGAAATTGT
CGGAGACGTTTTCGAAGAGCTTGATCGAGGAGGTTGGGCGATGGGGATGC
ATGAAACAGACAGGTGTGACCTTGAGGTACATGATGGAGTTTGGCTCAAA
ACCTACAGACAAGAATTTGCTAATTTCTGCTCAGTTTCTTCACAAAGAGC
TTCCAATTAGAATCGCCAGACGAGCAATTGAGCTCGAGACACTTCCTTAC
GGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTTCGAGACTGGTATTTGGA
CTCATTTCGTGATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATG
AGAGGGATTTTACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAAT
GTGGTGCCCATGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGA
TCCCAAGATTGTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATC
GGTTTTACATGTCTAGGATCGGAATTCGTATGCTTATTGGGCAGCATGTA
GAATTGCACAATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACAC
AAAAATGTCTCCAGTGCANGTTGCTAGGAATGCTAGTGAGCATGCACATT
GTGTTTGTCTGCGGGAGTATGGCAGTGCACCCGAATTTTATATCTACGGT
GATCCCAGTTTTACATTCCCTTACGTCCTTCACACTTGCATCTC
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