FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 3.704e-99 Identity = 171/193 (88.60%), Postives = 173/193 (89.64%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 3.704e-99 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 3.704e-99 Identity = 167/193 (86.53%), Postives = 174/193 (90.16%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+HIGQAGIQ+GNACWELYCLEHGIQP+GQM SDKTVGGGDDAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQ+STSVVEPYNSVLSTHS Sbjct: 1 MRECISVHIGQAGIQIGNACWELYCLEHGIQPNGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQISTSVVEPYNSVLSTHS 193 HSP 2 Score: 36.5798 bits (83), Expect = 3.704e-99 Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDVSVLLDNE+IYDI Sbjct: 192 HSL-LEHTDVSVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 6.304e-99 Identity = 170/193 (88.08%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKTVGGGDDAF TFFSETGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF AV VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 36.5798 bits (83), Expect = 6.304e-99 Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDVSVLLDNE+IYDI Sbjct: 192 HSL-LEHTDVSVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 2.383e-98 Identity = 169/193 (87.56%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQ DGQM DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 2.383e-98 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 3.108e-98 Identity = 169/193 (87.56%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQ DGQM DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 35.039 bits (79), Expect = 3.108e-98 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV++LLDNE+IYDI Sbjct: 192 HSL-LEHTDVAILLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 3.108e-98 Identity = 169/193 (87.56%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIHIGQAGIQVGNACWELYCLEHGIQ DGQM DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 35.039 bits (79), Expect = 3.108e-98 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV++LLDNE+IYDI Sbjct: 192 HSL-LEHTDVAILLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 4.055e-98 Identity = 169/193 (87.56%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 4.055e-98 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDVSV+LDNE++YDI Sbjct: 192 HSL-LEHTDVSVMLDNEAVYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 9.859e-97 Identity = 164/193 (84.97%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQ GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V VDYGKKSKLGFT+YPSPQVST+VVEPYNS+LSTHS Sbjct: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 9.859e-97 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 9.859e-97 Identity = 164/193 (84.97%), Postives = 172/193 (89.12%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQ GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V VDYGKKSKLGFT+YPSPQVST+VVEPYNS+LSTHS Sbjct: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 9.859e-97 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 1.286e-96 Identity = 166/193 (86.01%), Postives = 171/193 (88.60%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR +FLDLEPTV+DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 1.286e-96 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |