FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.384e-74
Identity = 120/193 (62.18%), Postives = 152/193 (78.76%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE +S+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  FNTFFSETG GK+VPR ++ DLEP V+DEVRTG YR LFHPEQ+I+GKEDA+NN+ARGHYT+GKE++D CLD++R++ADNC+GLQGFLVFH+                  VDYGKK+KL F VYP+PQ +TSVVEPYNS+L+TH+
Sbjct:    1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHT 193          

HSP 2 Score: 28.4906 bits (62), Expect = 5.384e-74
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+DV  ++DNE+IYDI
Sbjct:  194 TLEHSDVQFMVDNEAIYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 2.031e-73
Identity = 122/193 (63.21%), Postives = 151/193 (78.24%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTGAYR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVFH+                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHT 193          

HSP 2 Score: 27.7202 bits (60), Expect = 2.031e-73
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H D S ++DNE+IYDI
Sbjct:  194 TLEHADCSFMVDNEAIYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.648e-73
Identity = 133/198 (67.17%), Postives = 154/198 (77.78%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFN----TFFSETGAGKHV-PRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDY-GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            RE ISIHIGQAG+QVGN+CWELYCLEHGI+ DG + +D+      +  N    TFFSE+  GK V PRA+FLDLEPTVIDE+RTG Y+ LFHPEQLI+GKEDAANN+ARGHYT+GKE++D+C+DRIR+LAD C GLQGFLVFH+V                 +DY GKKSKL F VYPSPQVSTSVVEPYNSVLSTHS
Sbjct:    3 REIISIHIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHS 200          

HSP 2 Score: 31.9574 bits (71), Expect = 2.648e-73
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  622 HSLSVRHTDVSVLLDNESIYDI 687
            HSL + HTDVS +LDNE+IY+I
Sbjct:  199 HSL-LEHTDVSFMLDNEAIYNI 219          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 5.875e-73
Identity = 120/193 (62.18%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     DD F+TFFSETG GK+VPR ++ DLEP V+DEVRTG YR LFHPE +I+GKEDA+NN+ARGHYT+GKE++D  LD++R +ADNC+GLQGFLVFH+                  VDYGKK KL F VYP+PQV+TSVVEPYNS+L+TH+
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHT 193          

HSP 2 Score: 28.1054 bits (61), Expect = 5.875e-73
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D S ++DNE+IYDI
Sbjct:  194 TLEHSDCSFMVDNEAIYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.851e-72
Identity = 126/193 (65.28%), Postives = 153/193 (79.27%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE ISIH+GQAG Q+GNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR++++DLEP VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYT+GKE+VD   D+IR++ADNC+GLQGFLVFH+                  ++Y KKSKL F+VYP+PQVSTSVVEPYNSVL+TH+
Sbjct:    1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHA 193          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 8.362e-72
Identity = 119/193 (61.66%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP V+DEVRTG YR LFHPE LI+GKEDA+NN+ARGHYT+GKE++D  LD++R++AD+C+GLQGFLVFH+                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHT 193          

HSP 2 Score: 28.1054 bits (61), Expect = 8.362e-72
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D S ++DNE+IYDI
Sbjct:  194 TLEHSDCSFMVDNEAIYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.376e-71
Identity = 124/193 (64.25%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRECIS+HIGQAG+Q+GNACWEL+CLEH IQPDG      +    DD+F TFF ET   K+VPRA+ +DLEPTV+DEVRTG YR LFHPEQLI+GKEDAANN+ARGHYT+GK+ VD+  DRIRKLAD+C+GLQGFL+FH+                  V+YGKKSKL F +YP+PQ S++VVEPYNSVL+TH+
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHT 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.639e-70
Identity = 119/193 (61.66%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTGAYR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVFH+                  VDYGKKSKL F VYP+PQ +TSVVEPY++ L+T++
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNT 193          

HSP 2 Score: 24.6386 bits (52), Expect = 2.639e-70
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++   D S ++DNE+IYDI
Sbjct:  194 TLEQADCSFMVDNEAIYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.442e-70
Identity = 127/195 (65.13%), Postives = 155/195 (79.49%), Query Frame = 2
Query:   53 MRECISIH-IGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS++ +GQAG Q+GNACWELY LEHGI+PDG +    T   GG++ F+TFF+ETG+GK VPRAV++DLEP VIDEVRTGAYR+LFHPEQLISGKEDAANN+ARGHYT+G+E++D  LDRIRK++D C GLQGFL  H++                 +DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+
Sbjct:    1 MREVISVNAVGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHT 195          

HSP 2 Score: 23.8682 bits (50), Expect = 3.442e-70
Identity = 7/19 (36.84%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H D + ++DNE+IY++
Sbjct:  196 TLEHADCTFMVDNEAIYEM 214          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.442e-70
Identity = 118/193 (61.14%), Postives = 151/193 (78.24%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE +SIH+GQAG+Q+GNACWELY +EHG+ PDG+ LSD +    DD F+TFFSET +GK+VPR++++DLEP VIDEVR G YR LFHPE +I+GKEDAA+N+ARGHYTIGKE +D+ +D++R+L DNC GLQGF VFH+                   DYGKKSKL F+VYP+P +++SVVEPYNSVL+TH+
Sbjct:    1 MREVVSIHVGQAGVQIGNACWELYTIEHGLSPDGR-LSDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHT 192          

HSP 2 Score: 28.1054 bits (61), Expect = 3.442e-70
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D S ++DNE+IYDI
Sbjct:  193 TLEHSDCSFMVDNEAIYDI 211          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA_AJECA5.384e-7462.18Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA2_NEUCR2.031e-7363.21Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICDI2.648e-7367.17Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA_MYCGR5.875e-7362.18Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA2_SCHPO2.851e-7265.28Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA1_EMENI8.362e-7261.66Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA2_CHICK5.376e-7164.25Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_SORMA2.639e-7061.66Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO3.442e-7065.13Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBAA_SCHCO3.442e-7061.14Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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