FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.551e-70
Identity = 122/197 (61.93%), Postives = 153/197 (77.66%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD----DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+H+GQAG+Q+GNACWELYCLEHGI PDG    +  V   +    D F TFFSETG GK VPR++++DLEP VID+VRTG Y+ LFHPEQ+++GKEDA+NN+ARGHYT+GKE++D  L+RIR++ADNC+GLQGFLVFH+                  ++YGKKS L F+VYP+PQVSTSVVEPYNSVL+TH+
Sbjct:    1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHA 197          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.208e-69
Identity = 122/194 (62.89%), Postives = 152/194 (78.35%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSD-KTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE ISI++GQAG Q+GNACWELY  EHGI+PDG +        GG++ F+TFFSETG+GK+VPRA+++DLEP VIDEVRTG Y+ LFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+R+++D C GLQGFL  H++                 +DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGGEEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHT 194          

HSP 2 Score: 25.409 bits (54), Expect = 2.208e-69
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H D + ++DNE+IYD+
Sbjct:  195 TLEHADCTFMVDNEAIYDM 213          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.847e-68
Identity = 124/194 (63.92%), Postives = 148/194 (76.29%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE ISI++GQAG Q+GNACWELY LEHGI+PDG +    +   GG++ F+TFF ETG GK VPRA+++DLEP VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYT+G+EI+   LDRIRKLAD C GLQGFL  H++                  +YGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHT 194          

HSP 2 Score: 25.409 bits (54), Expect = 1.847e-68
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H D + ++DNE+IYD+
Sbjct:  195 TLEHADCTFMVDNEAIYDM 213          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.141e-68
Identity = 114/193 (59.07%), Postives = 148/193 (76.68%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+H+GQAG+Q+GNACWELY LEHG+ PDG+++ D       D+ +TFFSETG GKHVPR +++DLEP VID+V+ G YR LFHPE +I+GKEDAANN+ARGHYT+GKE++D  +D++R+LADNC+G QG  VFH+                   DYGKK+KL F VYP+PQ+S+SVVEPYNS+L+TH+
Sbjct:    1 MREVISVHVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSP--SKHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHT 191          

HSP 2 Score: 28.1054 bits (61), Expect = 3.141e-68
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D S ++DNE+IYDI
Sbjct:  192 TLEHSDCSFMVDNEAIYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 9.084e-68
Identity = 119/200 (59.50%), Postives = 151/200 (75.50%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG-------QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MREC+SIHIGQAGIQ+G+ACWELYCLEHGIQP+G         L +  +   + +F+TFF ET AGKHVPRA+F+DLEPTVID +RTG +R LFHPEQL+SGKEDAANN+ARG Y++G E++DL L+R RKLA+ C GLQGFL+F +                   +Y +K+KL F+VYP+P++ST+VVEPYNSVL+THS
Sbjct:    1 MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHS 200          

HSP 2 Score: 27.7202 bits (60), Expect = 9.084e-68
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            +  HTD + ++DNE++YDI
Sbjct:  201 TTEHTDCTFMVDNEAVYDI 219          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 2.627e-67
Identity = 117/192 (60.94%), Postives = 146/192 (76.04%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            REC+SIHIGQAG Q+GNACWELYC+EHG+   G  L ++       +   FFSE+  GKHVPRA+++DLEPTV+DE+R G Y  LFHP+Q+I+GKEDAANN+ARGHYTIGKE++D+ LDRIRK  +NC GLQGFLVFH+                  V++GKKSKL F+VYP+PQVSTSVVEPYNS+L+TH+
Sbjct:    6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAG-FLKEEEKNKKQQSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHT 196          

HSP 2 Score: 23.483 bits (49), Expect = 2.627e-67
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  643 TDVSVLLDNESIYDI 687
            +D S ++DNE+IYD+
Sbjct:  201 SDCSFMVDNEAIYDL 215          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 3.425e-67
Identity = 120/194 (61.86%), Postives = 149/194 (76.80%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE ISI++GQAG Q+GNACWELY LEHGI+ DG +    +   GG++ F+TFF ETG GK VPRA+++DLEP VIDEVRTG +++LFHPEQLI+GKEDAANN+ARGHYT+G+EIVD   +RIRK+AD C GLQGFL  H++                  +YGKKSKL F VYP+PQ+STSVVEPYN+VL+TH+
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHT 194          

HSP 2 Score: 26.5646 bits (57), Expect = 3.425e-67
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H D + ++DNE+IYDI
Sbjct:  195 TLEHADCTFMVDNEAIYDI 213          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.684e-66
Identity = 120/196 (61.22%), Postives = 150/196 (76.53%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDD-----AFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            E   IHIGQAG Q+GN+ WELY LEHG+  DG++  +K    G+D     +F TFF+ETG+GK+VPR++F+DL+P+ IDE+RTG YRQLFHPEQLISGKEDAANN+ARGHYT+GKE+VD  +DR+R+L+DNC+ LQGFLVFH+                   +YGKKSKL F VYPSP+VST+VVEPYN+VLSTHS
Sbjct:    4 EVCHIHIGQAGTQLGNSAWELYLLEHGLGADGRLDPEK----GEDINAGGSFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPSPRVSTAVVEPYNAVLSTHS 195          

HSP 2 Score: 25.409 bits (54), Expect = 1.684e-66
Identity = 8/19 (42.11%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ ++D + L+DNE++YDI
Sbjct:  196 TIENSDCTFLVDNEAVYDI 214          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.122e-65
Identity = 115/200 (57.50%), Postives = 149/200 (74.50%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDK-------TVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MREC+SIHIGQAG+Q+G+ACWELYCLEHGIQPDG +L  +        V   + + +TFF ET AGKHVPR +F+DLEPTVID +R G Y  LFHPEQL++GKEDAAN +ARG Y++G E+++L L+RIRKLA+ C+GLQGFL++ +                  V+Y KK KL F+VYPSP++ST+VVEPYN++L+THS
Sbjct:    1 MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHS 200          

HSP 2 Score: 24.6386 bits (52), Expect = 3.122e-65
Identity = 7/19 (36.84%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ ++D + ++DNE++YDI
Sbjct:  201 TIEYSDCAFMVDNEALYDI 219          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 6.922e-65
Identity = 112/191 (58.64%), Postives = 143/191 (74.87%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            E + IH+GQAG Q+GN+ WELY LEHG+  DG+   D TV G   +++TFF+E+  GK+VPR++F+DL+P+ IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYT+GKE+ +  LDRIRK+ DNC  LQGFLVFH+                   DY KK KL F+VYP+P+V+T+VVEPYN+VL+THS
Sbjct:    4 EVVHIHLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKKCKLEFSVYPAPRVATAVVEPYNAVLATHS 194          

HSP 2 Score: 29.261 bits (64), Expect = 6.922e-65
Identity = 10/19 (52.63%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+DV+ L+DNE++YDI
Sbjct:  195 TLEHSDVTFLVDNEAVYDI 213          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA1_SCHPO4.551e-7061.93Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA_CANAL2.208e-6962.89Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA1_YEAST1.847e-6863.92Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBAB_SCHCO3.141e-6859.07Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBAL3_HUMAN9.084e-6859.50Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA8_CAEEL2.627e-6760.94Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA3_YEAST3.425e-6761.86Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA2_EMENI1.684e-6661.22Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBAL3_MOUSE3.122e-6557.50Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA1_NEUCR6.922e-6558.64Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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