FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.536e-64
Identity = 115/154 (74.68%), Postives = 130/154 (84.42%), Query Frame = 2
Query:  170 KTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            +T+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGF VFH+                  VDYGKKSKL F++YP+ QVST+VVEPYNS+L+TH+
Sbjct:    1 ETIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHT 154          

HSP 2 Score: 26.9498 bits (58), Expect = 1.536e-64
Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D + ++DNE+IYDI
Sbjct:  155 TLEHSDCAFMVDNEAIYDI 173          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.673e-63
Identity = 107/193 (55.44%), Postives = 148/193 (76.68%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE IS+HIGQAG+Q+GNACWELYC EHGI P+GQ+  +K     D++  +FFS T  G +VPR + +DLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++  +++IR++AD+C GLQGFL++H+                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+
Sbjct:    1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLDQNKM---DDESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHT 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.673e-63
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  640 HTDVSVLLDNESIYDI 687
            ++D S L+DNE+IYD+
Sbjct:  194 YSDCSFLVDNEAIYDM 209          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.220e-63
Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--LSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            E + +H+GQAG Q+GN+ WELY LEHG+  DG+    +   V GG  ++ TFF+ET  GK+VPR++F+DL+P+ IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTIGKE+VD  +DRIR++ADNC  LQGFL+FH+                   +YGKKSKL F VYP+P+VST+VVEPYN+VLSTHS
Sbjct:    4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGG--SYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHS 194          

HSP 2 Score: 25.409 bits (54), Expect = 8.220e-63
Identity = 8/19 (42.11%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ ++D + L+DNE++YDI
Sbjct:  195 TIENSDCTFLVDNEAVYDI 213          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.955e-62
Identity = 108/193 (55.96%), Postives = 137/193 (70.98%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE I+IHIGQAGIQ G   W L C EHGI  DG   S    G  D   +  FSE   GK+VPR + +DLEP+V+D VR  +Y++L+HP Q+I+G+EDAANNFARGHYT+GK+++D+ +DR+RK+ADNCT LQGF +FH+V                 V++ KK KL +TVYPSPQ++TSVVEPYNSVLSTHS
Sbjct:    1 MREIINIHIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANGNSD--CSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHS 191          

HSP 2 Score: 31.9574 bits (71), Expect = 8.955e-62
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  622 HSLSVRHTDVSVLLDNESIYDI 687
            HSL + H D+SV+LDN++IYDI
Sbjct:  190 HSL-LEHNDISVVLDNQAIYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.985e-61
Identity = 114/204 (55.88%), Postives = 144/204 (70.59%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVG--------GGDDAFN---TFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE +SI IGQ GIQ+GNACWELY LEHGI  DG + + + +         G D + N   TFF+ETG GK VPR++F+DLEPTVID+VR G  R+L+HPEQLISGKEDAANN+ARG Y+IGKE++D    R++K+A+ C  LQGFL+FH++                  DY KK KL F VYPSP+VST+VVEPYN++L+THS
Sbjct:    1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHS 204          

HSP 2 Score: 25.0238 bits (53), Expect = 1.985e-61
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  640 HTDVSVLLDNESIYDI 687
            H+D   ++DNE+IYDI
Sbjct:  208 HSDCVFMVDNEAIYDI 223          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.590e-57
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  110 CWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 448
            CWELY LEHGIQPDG M SD TVG GDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGL
Sbjct:    1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 101/199 (50.75%), Postives = 137/199 (68.84%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKT------VGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            MRE I+I+IGQAG Q+GN CWEL+CLEHGIQPDG  +++         GG D A+N FF E   G+HVPRA+F+D EPTVIDE++TG Y  L+HPE LI GKEDA++NFA+G  T  + +++  +D IRK  +NCTGLQGF ++++V                   Y KK+KL   ++PSP++S+ VVEPYN+VL+TH+
Sbjct:    1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHA 198          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.615e-51
Identity = 88/171 (51.46%), Postives = 128/171 (74.85%), Query Frame = 2
Query:  119 LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            LYC EHGI PDG++  ++     D++  +FFS+T  G +VPR + +DLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++  +++IR++ADNC GLQGFL++H+                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+
Sbjct:    1 LYCKEHGILPDGRLDQNRM---DDESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHT 168          

HSP 2 Score: 24.6386 bits (52), Expect = 4.615e-51
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  640 HTDVSVLLDNESIYDI 687
            ++D S L+DNE+IYD+
Sbjct:  172 YSDCSFLVDNEAIYDM 187          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.706e-47
Identity = 85/108 (78.70%), Postives = 91/108 (84.26%), Query Frame = 2
Query:  308 LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            LFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVF+AV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 108          

HSP 2 Score: 35.4242 bits (80), Expect = 1.706e-47
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  622 HSLSVRHTDVSVLLDNESIYDI 687
            HSL + HTDV+VLLDNE+IYDI
Sbjct:  107 HSL-LEHTDVAVLLDNEAIYDI 127          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.784e-43
Identity = 85/192 (44.27%), Postives = 119/192 (61.98%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+ C EHGI P GQ+LS+  +    D  N +++E   G++VPRAV +DLEP  +D V+TG + Q+F P+  I G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGH 190          

HSP 2 Score: 24.2534 bits (51), Expect = 6.784e-43
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  634 VRHTDVSVLLDNESIYDI 687
            V + D  ++LDNE++YDI
Sbjct:  193 VENADECMVLDNEALYDI 210          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA1_CHICK1.536e-6474.68Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA_ENCCU1.673e-6355.44Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA_GLOLA8.220e-6359.59Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA6_NAEGR8.955e-6255.96Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA4_DROME1.985e-6155.88Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA_PICAB2.590e-5792.04Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBA1_ENTHI6.602e-5350.75Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_ENCHE4.615e-5151.46Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBA2_ANEPH1.706e-4778.70Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBB2_DAUCA6.784e-4344.27Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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