FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 1.536e-64 Identity = 115/154 (74.68%), Postives = 130/154 (84.42%), Query Frame = 2 Query: 170 KTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 +T+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+ QVST+VVEPYNS+L+TH+ Sbjct: 1 ETIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHT 154 HSP 2 Score: 26.9498 bits (58), Expect = 1.536e-64 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 155 TLEHSDCAFMVDNEAIYDI 173
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.673e-63 Identity = 107/193 (55.44%), Postives = 148/193 (76.68%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE IS+HIGQAG+Q+GNACWELYC EHGI P+GQ+ +K D++ +FFS T G +VPR + +DLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++ +++IR++AD+C GLQGFL++H+ ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ Sbjct: 1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLDQNKM---DDESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHT 190 HSP 2 Score: 24.6386 bits (52), Expect = 1.673e-63 Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1 Query: 640 HTDVSVLLDNESIYDI 687 ++D S L+DNE+IYD+ Sbjct: 194 YSDCSFLVDNEAIYDM 209
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 8.220e-63 Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 2 Query: 59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--LSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 E + +H+GQAG Q+GN+ WELY LEHG+ DG+ + V GG ++ TFF+ET GK+VPR++F+DL+P+ IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTIGKE+VD +DRIR++ADNC LQGFL+FH+ +YGKKSKL F VYP+P+VST+VVEPYN+VLSTHS Sbjct: 4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGG--SYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHS 194 HSP 2 Score: 25.409 bits (54), Expect = 8.220e-63 Identity = 8/19 (42.11%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ ++D + L+DNE++YDI Sbjct: 195 TIENSDCTFLVDNEAVYDI 213
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 8.955e-62 Identity = 108/193 (55.96%), Postives = 137/193 (70.98%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE I+IHIGQAGIQ G W L C EHGI DG S G D + FSE GK+VPR + +DLEP+V+D VR +Y++L+HP Q+I+G+EDAANNFARGHYT+GK+++D+ +DR+RK+ADNCT LQGF +FH+V V++ KK KL +TVYPSPQ++TSVVEPYNSVLSTHS Sbjct: 1 MREIINIHIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANGNSD--CSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHS 191 HSP 2 Score: 31.9574 bits (71), Expect = 8.955e-62 Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + H D+SV+LDN++IYDI Sbjct: 190 HSL-LEHNDISVVLDNQAIYDI 210
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.985e-61 Identity = 114/204 (55.88%), Postives = 144/204 (70.59%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVG--------GGDDAFN---TFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE +SI IGQ GIQ+GNACWELY LEHGI DG + + + + G D + N TFF+ETG GK VPR++F+DLEPTVID+VR G R+L+HPEQLISGKEDAANN+ARG Y+IGKE++D R++K+A+ C LQGFL+FH++ DY KK KL F VYPSP+VST+VVEPYN++L+THS Sbjct: 1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHS 204 HSP 2 Score: 25.0238 bits (53), Expect = 1.985e-61 Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 640 HTDVSVLLDNESIYDI 687 H+D ++DNE+IYDI Sbjct: 208 HSDCVFMVDNEAIYDI 223
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.590e-57 Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 2 Query: 110 CWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 448 CWELY LEHGIQPDG M SD TVG GDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGL Sbjct: 1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53 Identity = 101/199 (50.75%), Postives = 137/199 (68.84%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKT------VGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE I+I+IGQAG Q+GN CWEL+CLEHGIQPDG +++ GG D A+N FF E G+HVPRA+F+D EPTVIDE++TG Y L+HPE LI GKEDA++NFA+G T + +++ +D IRK +NCTGLQGF ++++V Y KK+KL ++PSP++S+ VVEPYN+VL+TH+ Sbjct: 1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHA 198
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 4.615e-51 Identity = 88/171 (51.46%), Postives = 128/171 (74.85%), Query Frame = 2 Query: 119 LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 LYC EHGI PDG++ ++ D++ +FFS+T G +VPR + +DLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++ +++IR++ADNC GLQGFL++H+ ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ Sbjct: 1 LYCKEHGILPDGRLDQNRM---DDESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHT 168 HSP 2 Score: 24.6386 bits (52), Expect = 4.615e-51 Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1 Query: 640 HTDVSVLLDNESIYDI 687 ++D S L+DNE+IYD+ Sbjct: 172 YSDCSFLVDNEAIYDM 187
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.706e-47 Identity = 85/108 (78.70%), Postives = 91/108 (84.26%), Query Frame = 2 Query: 308 LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 LFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 108 HSP 2 Score: 35.4242 bits (80), Expect = 1.706e-47 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 107 HSL-LEHTDVAVLLDNEAIYDI 127
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.784e-43 Identity = 85/192 (44.27%), Postives = 119/192 (61.98%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 MRE + I GQ G Q+G+ WE+ C EHGI P GQ+LS+ + D N +++E G++VPRAV +DLEP +D V+TG + Q+F P+ I G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V H++ +Y + L F+V+PSP+VS +VVEPYN+ LS H Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGH 190 HSP 2 Score: 24.2534 bits (51), Expect = 6.784e-43 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 634 VRHTDVSVLLDNESIYDI 687 V + D ++LDNE++YDI Sbjct: 193 VENADECMVLDNEALYDI 210 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |