FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 1.286e-96 Identity = 166/193 (86.01%), Postives = 171/193 (88.60%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR +FLDLEPTV+DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 1.286e-96 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 1.286e-96 Identity = 166/193 (86.01%), Postives = 171/193 (88.60%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR +FLDLEPTV+DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVF+AV VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 1.286e-96 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 2.396e-95 Identity = 164/193 (84.97%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQAGIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVF++V VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 2.396e-95 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE++YDI Sbjct: 192 HSL-LEHTDVAVMLDNEAVYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 3.126e-95 Identity = 162/193 (83.94%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+HIGQAGIQVGNACWELYCLEHGIQPDGQ+ DKT G DDAF+TFFS+TGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV V+YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS Sbjct: 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQVPGDKTAGHHDDAFSTFFSQTGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 HSP 2 Score: 36.1946 bits (82), Expect = 3.126e-95 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDVS+LLDNE+IYDI Sbjct: 192 HSL-LEHTDVSILLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2) HSP 1 Score: 335.88 bits (860), Expect = 4.078e-95 Identity = 163/193 (84.46%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGA KHVPR VFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVF++V VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 4.078e-95 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE++YDI Sbjct: 192 HSL-LEHTDVAVMLDNEAVYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 9.054e-95 Identity = 162/193 (83.94%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQ GIQVGNACW+L+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAVFLDLEPTV DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF+ FH+V VDYGKKSKL FT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQGGIQVGNACWDLFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVCDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLTFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 9.054e-95 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE++YDI Sbjct: 192 HSL-LEHTDVAVMLDNEAVYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 7.596e-94 Identity = 161/193 (83.42%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG M SD TVG DAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 7.596e-94 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 9.909e-94 Identity = 160/193 (82.90%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG M SD TVG DAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 9.909e-94 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 1.293e-93 Identity = 158/193 (81.87%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQ GIQ+GNACWELYCLEHGIQPDG M SDK +G DDAFNTFFSETGAGKHVPRAVFLDLEP+V+DEVRTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFL FHAV VDYGKKSKLGFT+YPSPQ+ST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHLGQGGIQIGNACWELYCLEHGIQPDGSMPSDKAIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPSVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLAFHAVGGGTGSGLGRLLLERLSVDYGKKSKLGFTIYPSPQISTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 1.293e-93 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 2.200e-93 Identity = 160/193 (82.90%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQAGIQVGNACWEL+CLEHGIQPDGQM S+KT+GGGDDAFNTFFSETG GKHVPR VFLDL PTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD IRKLAD CTGLQGFLVF++V VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 2.200e-93 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE++YDI Sbjct: 192 HSL-LEHTDVAVMLDNEAVYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |