FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 2.870e-93 Identity = 162/193 (83.94%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAG QVGNACWELYCLEHGIQPDGQM SDK+VG GDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDR+RKLAD CTGLQGFLVFH+V VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 32.7278 bits (73), Expect = 2.870e-93 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+ +LDNE+IYDI Sbjct: 192 HSL-LEHTDVAFMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 3.744e-93 Identity = 161/193 (83.42%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE I IHIGQAG QVGNACWEL+CLEHGIQPDG M SDKT+G DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DEVRTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLV+HAV VDYGKKSKLG+TVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 32.3426 bits (72), Expect = 3.744e-93 Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+ +LDNE+IYD+ Sbjct: 192 HSL-LEHTDVAAMLDNEAIYDL 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 4.884e-93 Identity = 160/193 (82.90%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAG+QVGNACWELYCLEHGIQPDG M SDKT+G DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF +V VDYGKKSKLGFTVYPSPQV+T+VVEPYNSVLSTH+ Sbjct: 1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHA 193 HSP 2 Score: 33.4982 bits (75), Expect = 4.884e-93 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 H+L + HTDV+V+LDNE+IYDI Sbjct: 192 HAL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 4.884e-93 Identity = 160/193 (82.90%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE I IHIGQAG QVGNACWEL+CLEHGIQPDG M SDKT+G DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DE+RTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLV+HAV VDYGKKSKLG+TVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 32.3426 bits (72), Expect = 4.884e-93 Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+ +LDNE+IYD+ Sbjct: 192 HSL-LEHTDVAAMLDNEAIYDL 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 6.372e-93 Identity = 158/193 (81.87%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG M SD +VG DAFNTFFSETG+GKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 6.372e-93 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 6.372e-93 Identity = 158/193 (81.87%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG M SD +VG DAFNTFFSETG+GKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 6.372e-93 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 6.372e-93 Identity = 160/193 (82.90%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGI DG M SD TVG DAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 6.372e-93 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1) HSP 1 Score: 327.02 bits (837), Expect = 1.845e-92 Identity = 158/193 (81.87%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE IS+HIGQ GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAV +DLEPTV DE+RTG YRQLFHPEQ+ISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGF+ FH+V VDYGKKSKL FTVYPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISVHIGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 1.845e-92 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE++YDI Sbjct: 192 HSL-LEHTDVAVMLDNEAVYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 2.407e-92 Identity = 159/193 (82.38%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAG+QVGNACWELYCLEHGIQPDG M S KT+G DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF +V VDYGKKSKLGFTVYPSPQV+T+VVEPYNSVLSTH+ Sbjct: 1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHA 193 HSP 2 Score: 33.4982 bits (75), Expect = 2.407e-92 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 H+L + HTDV+V+LDNE+IYDI Sbjct: 192 HAL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 2.407e-92 Identity = 158/193 (81.87%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV+DEVRTG YR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+F+AV VDYGKKSKL F +PSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 2.407e-92 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |