FC920219 | Citrus Genome Database

Overview


Name	FC920219
Unique Name	FC920219
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	688

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.595e-35
Identity = 75/194 (38.66%), Postives = 109/194 (56.19%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G + W     EHG+   G  Q  SD  +    +  N +F+E   GK+VPR++ +DLEP  +D VR+G +  LF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGASFWSTISGEHGLDSTGVYQGTSDLQL----ERMNVYFNEASGGKYVPRSILIDLEPGTMDAVRSGPFGNLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 24.6386 bits (52), Expect = 2.595e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.379e-35
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  DG  + + T     +  N +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERTNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 23.0978 bits (48), Expect = 3.379e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++Y+I
Sbjct:  189 VHQL-VENSDETFCIDNEALYEI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.379e-35
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  DG  + + T     +  N +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 23.0978 bits (48), Expect = 3.379e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++Y+I
Sbjct:  189 VHQL-VENSDETFCIDNEALYEI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.732e-35
Identity = 77/201 (38.31%), Postives = 110/201 (54.73%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDA---------FNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+   EHGIQ DG         GG+D           N +++E   GK+VPR+V +DLEP  +D ++   Y +LF P+  I G+  A NN+A+GHYT G E+V+  LD +R+  + C  LQGF V H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVQIQAGQCGNQIGSKFWEVISEEHGIQSDGFH------AGGEDEHLKRLQLERINVYYNEARDGKYVPRSVLVDLEPGTVDTIKASPYGKLFRPDNFIHGQSGAGNNWAKGHYTEGVELVESVLDVVRRETEGCDCLQGFQVTHSIGGGTGSGLGTLLISKIREEFPDRMMCTFSVVPSPKVSLTVVEPYNATLSVH 195

HSP 2 Score: 21.9422 bits (45), Expect = 5.732e-35
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  + +DNE+++DI
Sbjct:  194 VHQL-VENADEVMCIDNEALHDI 215

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.733e-35
Identity = 75/192 (39.06%), Postives = 107/192 (55.73%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ G Q+G A WE  C EHG+  +G  + +  +       + +F+E  +GK+VPRAV +DLEP  ID V+T     LF P+  I G+  A N +A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++       F+V PSP+VS +V+EPYN+ LS H
Sbjct:    1 MREIIHLSTGQCGNQIGAAFWETICGEHGLDNNGTYVGNNELQ--KSKLDVYFNEATSGKYVPRAVLVDLEPGTIDNVKTSQIGNLFRPDNFIFGQSSAGNVWAKGHYTEGAELVDSVLDVVRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDTMMATFSVVPSPKVSDTVIEPYNATLSVH 190

HSP 2 Score: 22.7126 bits (47), Expect = 5.733e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++Y+I
Sbjct:  189 VHQL-VENSDETFCIDNEALYNI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.733e-35
Identity = 74/192 (38.54%), Postives = 108/192 (56.25%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ   Q+G   WE+   EHGI+PDG    +  +    +  + +++E GA K+VPRAV +DLEP  +D VR+G    LF P+  + G+    NN+A+GHYT G E+VD  LD +RK A+    LQGF + H++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCRNQIGAKFWEVVSDEHGIEPDGLYKGNNDLQL--ERISVYYNEVGANKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGGGNNWAKGHYTEGAELVDAVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 24.6386 bits (52), Expect = 5.733e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.467e-35
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 24.6386 bits (52), Expect = 7.467e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.467e-35
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 24.6386 bits (52), Expect = 7.467e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.467e-35
Identity = 74/195 (37.95%), Postives = 106/195 (54.36%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+   G        G  D   +  N +F+E  + K+VPRAV +DLEP  +D VR G + QLF P+ ++ G+  A NN+A+GHYT G  +VD  +D +R+ A+ C  LQGF + H++                  ++       F+V PSP VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTIAGEHGLDGSGHY-----TGSSDLQLERMNVYFNEASSKKYVPRAVLVDLEPAALDAVRAGPFGQLFRPDNVVFGQSGAGNNWAKGHYTEGANLVDQVIDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPAGMMATFSVVPSPMVSDTVVEPYNATLSIH 190

HSP 2 Score: 25.0238 bits (53), Expect = 7.467e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V H+D +  +DNE++Y+I
Sbjct:  189 IHQL-VEHSDETFCIDNEALYNI 210

[Close]

BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.468e-35
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2

Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190

HSP 2 Score: 24.6386 bits (52), Expect = 7.468e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210

The following BLAST results are available for this feature:

BLAST of FC920219 vs. ExPASy Swiss-Prot

BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413


Match Name	E-value	Identity	Description
TBB_PNECA	2.595e-35	38.66	Tubulin beta chain OS=Pneumocystis carinii GN=TUB-...	[more]
TBB_UNCNE	3.379e-35	39.58	Tubulin beta chain OS=Uncinula necator PE=3 SV=1	[more]
TBB2_ERYPI	3.379e-35	39.58	Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2...	[more]
TBB_DICDI	5.732e-35	38.31	Tubulin beta chain OS=Dictyostelium discoideum GN=...	[more]
TBB_CANAL	5.733e-35	39.06	Tubulin beta chain OS=Candida albicans GN=TUB2 PE=...	[more]
TBB_PLESA	5.733e-35	38.54	Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV...	[more]
TBB_EPITY	7.467e-35	38.54	Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=...	[more]
TBB_ACRCO	7.467e-35	38.54	Tubulin beta chain OS=Acremonium coenophialum GN=T...	[more]
TBB_TRIRU	7.467e-35	37.95	Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=...	[more]
TBB_GIBZE	7.468e-35	38.54	Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT